Evidence map›Paper›PMID 26493387›Full record

ArticleGenes, chromosomes & cancer2016

BCOR internal tandem duplication and YWHAE-NUTM2B/E fusion are mutually exclusive events in clear cell sarcoma of the kidney.

Jenny Karlsson, Anders Valind, David Gisselsson

Abstract read
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In one paragraph

Article in Genes, chromosomes & cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Small round cell sarcomas.Nature reviews. Disease primers · 2022
    Review
  4. Article
  5. Genetic variation ofZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
  6. Article
  7. Review
  8. Specific and Sensitive Diagnosis ofFrontiers in oncology · 2021
    Article
  9. Review
  10. Myxoid smooth muscle neoplasia of the uterus: comprehensive analysis by next-generation sequencing and nucleic acid hybridization.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Article
  11. Article
  12. Article
  13. BCOR involvement in cancer.Epigenomics · 2019
    Review
  14. American journal of translational research · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. ZC3H7B-BCOR high-grade endometrial stromal sarcomas: a report of 17 cases of a newly defined entity.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jenny KarlssonDepartment of Clinical Genetics, Lund University, Lund, Sweden.
Anders ValindDepartment of Clinical Genetics, Lund University, Lund, Sweden.
David GisselssonDepartment of Clinical Genetics, Lund University, Lund, Sweden.
Lund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell sarcoma of the kidney (CCSK) is the second most common pediatric renal tumor. Two recurrent genetic aberrations have been described in CCSK. One is a fusion of YWHAE and NUTM2B/E, the other is an internal tandem duplication (ITD) in the BCOR gene. Here it is shown that YWHAE-NUTM2B/E fusion and the BCOR ITD are mutually exclusive events and activated different downstream signaling systems. This has important diagnostic implications and opens up for further mechanistic studies of CCSK pathogenesis.

Indexed as

14-3-3 ProteinsChromosome DuplicationGene Expression ProfilingGenetic Predisposition to DiseaseHumansKidney NeoplasmsMembrane ProteinsOncogene Proteins, FusionProto-Oncogene ProteinsRepressor ProteinsSarcoma, Clear CellSequence Analysis, RNASerine EndopeptidasesTandem Repeat Sequences14-3-3 ProteinsBCOR protein, humanMembrane ProteinsOncogene Proteins, FusionProto-Oncogene ProteinsRepressor ProteinsSerine Endopeptidasestype I signal peptidaseYWHAE protein, human

Identifiers

PMID26493387
OpenAlexW1814420654

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.