Evidence map›Paper›PMID 26492035›Full record

ArticlePLoS genetics2015

MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis.

Cheng-Guo Duan, Xingang Wang, Kai Tang, Huiming Zhang, Satendra K Mangrauthia, Mingguang Lei, Chuan-Chih Hsu, Yueh-Ju Hou, Chunguo Wang, Yan Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Review
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  9. Article
  10. Fine mapping and characterization ofFrontiers in genetics · 2022
    Article
  11. Redox Components: Key Regulators of Epigenetic Modifications in Plants.International journal of molecular sciences · 2020
    Review
  12. Active DNA Demethylation in Plants.International journal of molecular sciences · 2019
    Review
  13. Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Peroxisomal β-oxidation regulates histone acetylation and DNA methylation inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Thiol Based Redox Signaling in Plant Nucleus.Frontiers in plant science · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Cheng-Guo DuanDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America.
Xingang WangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America.
Kai TangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America.
Huiming ZhangShanghai Center for Plant Stress Biology, Shanghai Institute of Biological Sciences, Chinese Academy of Sciences, China.
Satendra K MangrauthiaDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America; Biotechnology Section, Indian Institute of Rice Research (IIRR), Hyderabad, India.
Mingguang LeiDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America.
Chuan-Chih HsuDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.
Yueh-Ju HouDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America.
Chunguo WangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America; College of Life Sciences Nankai University, Tianjin, China.
Yan LiEcological Security and Protection Key laboratory of Sichuan Province, Mianyang Normal University, Mianyang, Sichuan, China.
W Andy TaoDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, United States of America.
Jian-Kang ZhuDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana, United States of America; Shanghai Center for Plant Stress Biology, Shanghai Institute of Biological Sciences, Chinese Academy of Sciences, China.
Purdue University West Lafayette · USChinese Academy of Sciences · CNMianyang Normal University · CN

Funding

CALCIUM SIGNALING--INTRACELL ION HOMEOSTASIS REGULATIONR01GM059138 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 1999 to 2015
$4.4M
DNA Demethylation and Transcriptional Gene SilencingR01GM070795 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHU, JIAN-KANG · 2004 to 2015
$4.0M
NIGMS NIH HHS R01 GM059138NIGMS NIH HHS R01 GM070795
6 · The paper itself

Abstract

DNA demethylation mediated by the DNA glycosylase ROS1 helps determine genomic DNA methylation patterns and protects active genes from being silenced. However, little is known about the mechanism of regulation of ROS1 enzymatic activity. Using a forward genetic screen, we identified an anti-silencing (ASI) factor, ASI3, the dysfunction of which causes transgene promoter hyper-methylation and silencing. Map-based cloning identified ASI3 as MET18, a component of the cytosolic iron-sulfur cluster assembly (CIA) pathway. Mutation in MET18 leads to hyper-methylation at thousands of genomic loci, the majority of which overlap with hypermethylated loci identified in ros1 and ros1dml2dml3 mutants. Affinity purification followed by mass spectrometry indicated that ROS1 physically associates with MET18 and other CIA components. Yeast two-hybrid and split luciferase assays showed that ROS1 can directly interact with MET18 and another CIA component, AE7. Site-directed mutagenesis of ROS1 indicated that the conserved iron-sulfur motif is indispensable for ROS1 enzymatic activity. Our results suggest that ROS1-mediated active DNA demethylation requires MET18-dependent transfer of the iron-sulfur cluster, highlighting an important role of the CIA pathway in epigenetic regulation.

Indexed as

Epigenesis, GeneticArabidopsisArabidopsis ProteinsCarrier ProteinsCytosolDNA MethylationGene Expression Regulation, PlantIron-Sulfur ProteinsMutagenesis, Site-DirectedMutationNuclear ProteinsPromoter Regions, GeneticArabidopsis ProteinsCarrier ProteinsIron-Sulfur ProteinsMET18 protein, ArabidopsisNuclear ProteinsROS1 protein, Arabidopsis

Identifiers

PMID26492035
PMCPMC4619598
OpenAlexW2172659855

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.