Evidence map›Paper›PMID 26491873›Full record

ArticlePloS one2015

Rationally Targeted Mutations at the V1V2 Domain of the HIV-1 Envelope to Augment Virus Neutralization by Anti-V1V2 Monoclonal Antibodies.

Guomiao Shen, Chitra Upadhyay, Jing Zhang, Ruimin Pan, Susan Zolla-Pazner, Xiang-Peng Kong, Catarina E Hioe

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Mucosal Delivery of HIV-1 Glycoprotein Vaccine Candidate Enabled by Short Carbon Nanotubes.Particle & particle systems characterization : measurement and description of particle properties and behavior in powders and other disperse systems · 2022
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guomiao ShenVeterans Affairs New York Harbor Healthcare System - Manhattan Campus, New York, New York, United States of America; Department of Pathology, New York University School of Medicine, New York, New York, United States of America.
Chitra UpadhyayVeterans Affairs New York Harbor Healthcare System - Manhattan Campus, New York, New York, United States of America; Department of Pathology, New York University School of Medicine, New York, New York, United States of America.
Jing ZhangVeterans Affairs New York Harbor Healthcare System - Manhattan Campus, New York, New York, United States of America; Department of Pathology, New York University School of Medicine, New York, New York, United States of America.
Ruimin PanDepartment of Biochemistry and Pharmacology, New York University School of Medicine, New York, New York, United States of America.
Susan Zolla-PaznerVeterans Affairs New York Harbor Healthcare System - Manhattan Campus, New York, New York, United States of America; Department of Pathology, New York University School of Medicine, New York, New York, United States of America.
Xiang-Peng KongDepartment of Biochemistry and Pharmacology, New York University School of Medicine, New York, New York, United States of America.
Catarina E HioeVeterans Affairs New York Harbor Healthcare System - Manhattan Campus, New York, New York, United States of America; Department of Pathology, New York University School of Medicine, New York, New York, United States of America.

Funding

Vaccines to Induce Functional Antibodies Targeting the V2 Loop P01AI100151 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, SHIXIA · 2012 to 2017
$15.4M
Contributions of anti-V2 antibodies in protection against HIVR01AI102740 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HIOE, CATARINA E · 2012 to 2016
$2.5M
NIAID NIH HHS P01 AI100151NIAID NIH HHS R01 AI102740
6 · The paper itself

Abstract

HIV-1 envelope glycoproteins (Env) are the only viral antigens present on the virus surface and serve as the key targets for virus-neutralizing antibodies. However, HIV-1 deploys multiple strategies to shield the vulnerable sites on its Env from neutralizing antibodies. The V1V2 domain located at the apex of the HIV-1 Env spike is known to encompass highly variable loops, but V1V2 also contains immunogenic conserved elements recognized by cross-reactive antibodies. This study evaluates human monoclonal antibodies (mAbs) against V2 epitopes which overlap with the conserved integrin α4β7-binding LDV/I motif, designated as the V2i (integrin) epitopes. We postulate that the V2i Abs have weak or no neutralizing activities because the V2i epitopes are often occluded from antibody recognition. To gain insights into the mechanisms of the V2i occlusion, we evaluated three elements at the distal end of the V1V2 domain shown in the structure of V2i epitope complexed with mAb 830A to be important for antibody recognition of the V2i epitope. Amino-acid substitutions at position 179 that restore the LDV/I motif had minimal effects on virus sensitivity to neutralization by most V2i mAbs. However, a charge change at position 153 in the V1 region significantly increased sensitivity of subtype C virus ZM109 to most V2i mAbs. Separately, a disulfide bond introduced to stabilize the hypervariable region of V2 loop also enhanced virus neutralization by some V2i mAbs, but the effects varied depending on the virus. These data demonstrate that multiple elements within the V1V2 domain act independently and in a virus-dependent fashion to govern the antibody recognition and accessibility of V2i epitopes, suggesting the need for multi-pronged strategies to counter the escape and the shielding mechanisms obstructing the V2i Abs from neutralizing HIV-1.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHumansMolecular Sequence DataMutagenesis, Site-DirectedMutationProtein ConformationProtein Structure, TertiarySequence Homology, Amino AcidAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID26491873
PMCPMC4619609

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.