Evidence map›Paper›PMID 26491418›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.

Reza M Salek, Steffen Neumann, Daniel Schober, Jan Hummel, Kenny Billiau, Joachim Kopka, Elon Correa, Theo Reijmers, Antonio Rosato, Leonardo Tenori and 29 more

Open access · hybridAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 3 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 3 syntheses or guidelines pooled it, 189 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
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  8. Review
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  13. Designing optimal experiments in metabolomics.Metabolomics : Official journal of the Metabolomic Society · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Perspective: use and reuse of NMR-based metabolomics data: what works and what remains challenging.Metabolomics : Official journal of the Metabolomic Society · 2024
    Review
  18. Review
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 18 institutions in 7 countries.

Reza M SalekEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK ; Department of Biochemistry, University of Cambridge, Cambridge, CB2 1GA UK.
Steffen NeumannDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Germany.
Daniel SchoberDepartment of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle, Germany.
Jan HummelMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Kenny BilliauMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Joachim KopkaMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Elon CorreaSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess St., Manchester, M1 7DN UK.
Theo ReijmersDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, The Netherlands.
Antonio RosatoMagnetic Resonance Center (CERM), University of Florence, 50019 Sesto Fiorentino, FI Italy.
Leonardo TenoriMagnetic Resonance Center (CERM), University of Florence, 50019 Sesto Fiorentino, FI Italy ; FiorGen Foundation, 50019 Sesto Fiorentino, FI Italy.
Paola TuranoMagnetic Resonance Center (CERM), University of Florence, 50019 Sesto Fiorentino, FI Italy.
Silvia MarinDepartment of Biochemistry and Molecular Biology, Faculty of Biology, IBUB, Universitat de Barcelona, Diagonal 643, 08028 Barcelona, Spain.
Catherine DebordeINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux - MetaboHUB, Functional Genomics Center, IBVM, Centre INRA Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
Daniel JacobINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux - MetaboHUB, Functional Genomics Center, IBVM, Centre INRA Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
Dominique RolinINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux - MetaboHUB, Functional Genomics Center, IBVM, Centre INRA Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
Benjamin DartiguesCentre of bioinformatics of Bordeaux (CBiB), University of Bordeaux, 33000 Bordeaux, France.
Pablo ConesaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK.
Kenneth HaugEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK.
Philippe Rocca-SerraUniversity of Oxford e-Research Centre, 7 Keble Road, Oxford, OX1 3QG UK.
Steve O'HaganSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess St., Manchester, M1 7DN UK.
Jie HaoComputational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington, London, SW7 2AZ UK.
Michael van VlietDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, The Netherlands.
Marko Sysi-AhoZora Biosciences OY, 02150 Espoo, Finland.
Christian LudwigSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT UK.
Jildau BouwmanMicrobiology & Systems Biology, TNO, Zeist, The Netherlands.
Marta CascanteDepartment of Biochemistry and Molecular Biology, Faculty of Biology, IBUB, Universitat de Barcelona, Diagonal 643, 08028 Barcelona, Spain.
Timothy EbbelsComputational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington, London, SW7 2AZ UK.
Julian L GriffinMedical Research Council Human Nutrition Research, Fulbour Road, Cambridge, CB1 9NL UK ; Department of Biochemistry, University of Cambridge, Cambridge, CB2 1GA UK.
Annick MoingINRA, Univ. Bordeaux, UMR1332 Fruit Biology and Pathology, Metabolome Facility of Bordeaux - MetaboHUB, Functional Genomics Center, IBVM, Centre INRA Bordeaux, 71 av Edouard Bourlaux, 33140 Villenave d'Ornon, France.
Macha NikolskiUniversity of Bordeaux, CBiB/LaBRI, 33000 Bordeaux, France.
Matej OresicZora Biosciences OY, 02150 Espoo, Finland.
Susanna-Assunta SansoneUniversity of Oxford e-Research Centre, 7 Keble Road, Oxford, OX1 3QG UK.
Mark R ViantSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT UK.
Royston GoodacreSchool of Chemistry & Manchester Institute of Biotechnology, University of Manchester, 131 Princess St., Manchester, M1 7DN UK.
Ulrich L GüntherSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT UK.
Thomas HankemeierDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University, Leiden, The Netherlands.
Claudio LuchinatMagnetic Resonance Center (CERM), University of Florence, 50019 Sesto Fiorentino, FI Italy.
Dirk WaltherMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Christoph SteinbeckEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK.
Max Planck Institute of Molecular Plant Physiology · DEInteruniversity Consortium for Magnetic Resonance · ITLeiden University · NLUniversité de Bordeaux · FRUniversity of Birmingham · GBUniversity of Manchester · GBWellcome Trust · GBBiologie du Fruit et Pathologie · FRImperial College London · GBLeibniz Institute of Plant Biochemistry · DEUniversity of Oxford · GBZora Biosciences (Finland) · FIEuropean Bioinformatics Institute · GBInstitut de Biologia Molecular de Barcelona · ESLaboratoire Bordelais de Recherche en Informatique · FRMRC Human Nutrition Research · GBUniversitat de Barcelona · ESUniversity of Florence · IT

Funding

Biotechnology and Biological Sciences Research Council BB/C519038/1Biotechnology and Biological Sciences Research Council BB/D006422/1Biotechnology and Biological Sciences Research Council BB/E025080/1Biotechnology and Biological Sciences Research Council BB/I000771/1Biotechnology and Biological Sciences Research Council BB/I000933/1Medical Research Council MC_QA137293Medical Research Council MC_UP_A090_1006
6 · The paper itself

Abstract

Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative 'coordination of standards in metabolomics' (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities' participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.

Indexed as

Coordination and data sharing communityData exchangeData standardse-InfrastructureMetabolomicsMetabonomics

Identifiers

PMID26491418
PMCPMC4605977
OpenAlexW2128831025

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.