Evidence map›Paper›PMID 26491184›Full record

ArticleJournal of clinical microbiology2016

High Incidence of Invasive Group A Streptococcus Disease Caused by Strains of Uncommon emm Types in Thunder Bay, Ontario, Canada.

Taryn B T Athey, Sarah Teatero, Lee E Sieswerda, Jonathan B Gubbay, Alex Marchand-Austin, Aimin Li, Jessica Wasserscheid, Ken Dewar, Allison McGeer, David Williams and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 3 pooled it
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 3 syntheses or guidelines pooled it, 60 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Invasive group A streptococcal (iGAS) surveillance in Island Health, British Columbia, 2022.Canada communicable disease report = Releve des maladies transmissibles au Canada · 2023
    Article
  7. A review of penicillin binding protein and group AFrontiers in cellular and infection microbiology · 2023
    Review
  8. Invasive Group A Streptococcal Infections Among People Who Inject Drugs and People Experiencing Homelessness in the United States, 2010-2017.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  9. Invasive bacterial diseases in northern Canada, 1999 to 2018.Canada communicable disease report = Releve des maladies transmissibles au Canada · 2021
    Article
  10. Article
  11. Article
  12. A Review ofPathogens (Basel, Switzerland) · 2021
    Review
  13. Cryptic prophages within aMicrobial genomics · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Risk factors associated with group A Streptococcus acquisition in a large, urban homeless shelter outbreak.Canadian journal of public health = Revue canadienne de sante publique · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Taryn B T AtheyPublic Health Ontario, Toronto, Ontario, Canada.
Sarah TeateroPublic Health Ontario, Toronto, Ontario, Canada.
Lee E SieswerdaThunder Bay District Health Unit, Thunder Bay, Ontario, Canada Department of Health Sciences, Lakehead University, Thunder Bay, Ontario, Canada.
Jonathan B GubbayPublic Health Ontario, Toronto, Ontario, Canada Department of Laboratory Medicine and Pathobiology, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada Department of Paediatrics, The Hospital for Sick Children, Toronto, Ontario, Canada.
Alex Marchand-AustinPublic Health Ontario, Toronto, Ontario, Canada Department of Laboratory Medicine and Pathobiology, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
Aimin LiPublic Health Ontario, Toronto, Ontario, Canada.
Jessica WasserscheidMcGill University and Genome Quebec Innovation Centre, Montreal, Quebec, Canada.
Ken DewarMcGill University and Genome Quebec Innovation Centre, Montreal, Quebec, Canada.
Allison McGeerDepartment of Laboratory Medicine and Pathobiology, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada Department of Microbiology, Mount Sinai Hospital, Toronto, Ontario, Canada.
David WilliamsThunder Bay District Health Unit, Thunder Bay, Ontario, Canada.
Nahuel FittipaldiPublic Health Ontario, Toronto, Ontario, Canada Department of Laboratory Medicine and Pathobiology, Faculty of Medicine, University of Toronto, Toronto, Ontario, Canada nahuel.fittipaldi@oahpp.ca.
Public Health Ontario · CAMcGill University and Génome Québec Innovation Centre · CAThunder Bay Regional Health Sciences Centre · CAUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An outbreak of type emm59 invasive group A Streptococcus (iGAS) disease was declared in 2008 in Thunder Bay District, Northwestern Ontario, 2 years after a countrywide emm59 epidemic was recognized in Canada. Despite a declining number of emm59 infections since 2010, numerous cases of iGAS disease continue to be reported in the area. We collected clinical information on all iGAS cases recorded in Thunder Bay District from 2008 to 2013. We also emm typed and sequenced the genomes of all available strains isolated from 2011 to 2013 from iGAS infections and from severe cases of soft tissue infections. We used whole-genome sequencing data to investigate the population structure of GAS strains of the most frequently isolated emm types. We report an increased incidence of iGAS in Thunder Bay compared to the metropolitan area of Toronto/Peel and the province of Ontario. Illicit drug use, alcohol abuse, homelessness, and hepatitis C infection were underlying diseases or conditions that might have predisposed patients to iGAS disease. Most cases were caused by clonal strains of skin or generalist emm types (i.e., emm82, emm87, emm101, emm4, emm83, and emm114) uncommonly seen in other areas of the province. We observed rapid waxing and waning of emm types causing disease and their replacement by other emm types associated with the same tissue tropisms. Thus, iGAS disease in Thunder Bay District predominantly affects a select population of disadvantaged persons and is caused by clonally related strains of a few skin and generalist emm types less commonly associated with iGAS in other areas of Ontario.

Indexed as

Disease OutbreaksGenotypeAdolescentAdultAgedAged, 80 and overAntigens, BacterialBacterial Outer Membrane ProteinsCarrier ProteinsChildChild, PreschoolFemaleGenetic VariationGenotyping TechniquesHumansIncidenceAntigens, BacterialBacterial Outer Membrane ProteinsCarrier Proteinsstreptococcal M protein

Identifiers

PMID26491184
PMCPMC4702752
OpenAlexW1796681918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.