Evidence map›Paper›PMID 26489029›Full record

ArticleKidney international2016

Whole exome sequencing identifies causative mutations in the majority of consanguineous or familial cases with childhood-onset increased renal echogenicity.

Daniela A Braun, Markus Schueler, Jan Halbritter, Heon Yung Gee, Jonathan D Porath, Jennifer A Lawson, Rannar Airik, Shirlee Shril, Susan J Allen, Deborah Stein and 12 more

Abstract read
In one paragraph

Article in Kidney international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Review
  2. Kidney international reports · 2026
    Article
  3. Article
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  5. Article
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  15. Article
  16. Nephronophthisis: a pathological and genetic perspective.Pediatric nephrology (Berlin, Germany) · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Daniela A Braun *Division of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Markus Schueler *Division of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Jan HalbritterDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Heon Yung GeeDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Jonathan D PorathDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Jennifer A LawsonDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Rannar AirikDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Shirlee ShrilDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Susan J AllenDepartment of Pediatrics, University of Michigan, Michigan, USA.
Deborah SteinDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Adila Al KindyDepartment of Genetics, Sultan Qaboos University Hospital, Sultanate of Oman.
Bodo B BeckInstitute for Human Genetics, University of Cologne, Germany.
Nurcan CengizBaskent University, School of Medicine, Adana Medical Training and Research Center, Department of Pediatric Nephrology, Adana, Turkey.
Khemchand N MooraniDepartment of Pediatric Nephrology, National Institute of Child Health, Karachi 75510, Pakistan.
Fatih OzaltinFaculty of Medicine, Department of Pediatric Nephrology, Hacettepe University, Ankara, Turkey.
Seema HashmiDepartment of Pediatric Nephrology, Sindh Institute of Urology and Transplantation, SIUT, Karachi, Pakistan.
John A SayerInstitute of Genetic Medicine, International Centre for Life, Newcastle University, Central Parkway, Newcastle NE1 3BZ, UK.
Detlef BockenhauerUniversity College London, Institute of Child Health and Pediatric Nephrology, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Neveen A SolimanDepartment of Pediatrics, Kasr Al Ainy School of Medicine, Cairo University, Cairo, Egypt.
Edgar A OttoDepartment of Pediatrics, University of Michigan, Michigan, USA.
Richard P LiftonDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Friedhelm HildebrandtDivision of Nephrology, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI PREISIG, PATRICIA A · 2008 to 2022
$16.8M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Functional characterization of the gene NPHP4R01DK064614 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2007
$1.3M
The role of DNA damage response signaling in chronic kidney diseaseR00DK099434 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI AIRIK, RANNAR · 2015 to 2017
$733k
The role of DNA damage response signaling in chronic kidney diseaseK99DK099434 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI AIRIK, RANNAR · 2013 to 2014
$180k
NCATS NIH HHS UL1 TR001863NHGRI NIH HHS 5U54HG006504NHGRI NIH HHS U54 HG006504NHGRI NIH HHS UM1 HG006504NIDDK NIH HHS DK064614NIDDK NIH HHS DK099434NIDDK NIH HHS DK1068306NIDDK NIH HHS DK1069274NIDDK NIH HHS K99 DK099434NIDDK NIH HHS P30 DK079310NIDDK NIH HHS R00 DK099434NIDDK NIH HHS R01 DK064614NIDDK NIH HHS R01 DK068306
6 · The paper itself

Abstract

Chronically increased echogenicity on renal ultrasound is a sensitive early finding of chronic kidney disease that can be detected before manifestation of other symptoms. Increased echogenicity, however, is not specific for a certain etiology of chronic kidney disease. Here, we performed whole exome sequencing in 79 consanguineous or familial cases of suspected nephronophthisis in order to determine the underlying molecular disease cause. In 50 cases, there was a causative mutation in a known monogenic disease gene. In 32 of these cases whole exome sequencing confirmed the diagnosis of a nephronophthisis-related ciliopathy. In 8 cases it revealed the diagnosis of a renal tubulopathy. The remaining 10 cases were identified as Alport syndrome (4), autosomal-recessive polycystic kidney disease (2), congenital anomalies of the kidney and urinary tract (3), and APECED syndrome (1). In 5 families, in whom mutations in known monogenic genes were excluded, we applied homozygosity mapping for variant filtering and identified 5 novel candidate genes (RBM48, FAM186B, PIAS1, INCENP, and RCOR1) for renal ciliopathies. Thus, whole exome sequencing allows the detection of the causative mutation in 2/3 of affected individuals, thereby presenting the etiologic diagnosis, and allows identification of novel candidate genes.

Indexed as

Age of OnsetCohort StudiesDNA Mutational AnalysisExomeHumansKidney Diseases, CysticRenal Insufficiency, Chronic

Identifiers

PMID26489029
PMCPMC4840095

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