Evidence map›Paper›PMID 26488651›Full record

ArticleBiophysical journal2015

Temperature Effect on Ionic Current and ssDNA Transport through Nanopores.

Linda Payet, Marlène Martinho, Céline Merstorf, Manuela Pastoriza-Gallego, Juan Pelta, Virgile Viasnoff, Loïc Auvray, Murugappan Muthukumar, Jérôme Mathé

Abstract readValidation Study
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  20. Translocation of polyampholytes and intrinsically disordered proteinsThe European physical journal. E, Soft matter · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Linda PayetLAMBE, équipe MPI, CNRS-UMR 8587, Université d'Évry, Évry, France.
Marlène MartinhoLAMBE, équipe MPI, CNRS-UMR 8587, Université d'Évry, Évry, France.
Céline MerstorfLAMBE, équipe MPI, CNRS-UMR 8587, Université d'Évry, Évry, France.
Manuela Pastoriza-GallegoLAMBE, équipe MPI, CNRS-UMR 8587, Université de Cergy-Pontoise, Cergy-Pontoise, France.
Juan PeltaLAMBE, équipe MPI, CNRS-UMR 8587, Université d'Évry, Évry, France.
Virgile ViasnoffLaboratoire Gulliver équipe NBP, CNRS-UMR 7083, ESPCI, Paris, France; CNRS UMI 3639, MechanoBiology Institute at National University of Singapore, Singapore, Singapore.
Loïc AuvrayLaboratoire MSC, CNRS-UMR 7057, Université Denis Diderot, Paris, France.
Murugappan MuthukumarDepartment of Polymer Science and Engineering, University of Massachusetts, Amherst, Massachusetts.
Jérôme MathéLAMBE, équipe MPI, CNRS-UMR 8587, Université d'Évry, Évry, France. Electronic address: jerome.mathe@univ-evry.fr.

Funding

Modeling Macromolecular Transport through Protein Channels and NanoporesR01HG002776 · NHGRI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI MUTHUKUMAR, MURUGAPPAN · 2003 to 2022
$5.3M
NHGRI NIH HHS R01 HG002776NHGRI NIH HHS R01HG002776-11
6 · The paper itself

Abstract

We have investigated the role of electrostatic interactions in the transport of nucleic acids and ions through nanopores. The passage of DNA through nanopores has so far been conjectured to involve a free-energy barrier for entry, followed by a downhill translocation where the driving voltage accelerates the polymer. We have tested the validity of this conjecture by using two toxins, α-hemolysin and aerolysin, which differ in their shape, size, and charge. The characteristic timescales in each toxin as a function of temperature show that the entry barrier is ∼15 kBT and the translocation barrier is ∼35 kBT, although the electrical force in the latter step is much stronger. Resolution of this fact, using a theoretical model, reveals that the attraction between DNA and the charges inside the barrel of the pore is the most dominant factor in determining the translocation speed and not merely the driving electrochemical potential gradient.

Indexed as

Biological TransportDNA, Single-StrandedNanoporesStatic ElectricityTemperatureBacterial ToxinsHemolysin ProteinsMembranes, ArtificialModels, TheoreticalMotionPhosphatidylcholinesPolymersPore Forming Cytotoxic Proteins1,2-diphytanoylphosphatidylcholineaerolysinBacterial ToxinsDNA, Single-StrandedHemolysin ProteinsMembranes, ArtificialPhosphatidylcholinesPolymersPore Forming Cytotoxic Proteinsstaphylococcal alpha-toxin

Identifiers

PMID26488651
PMCPMC4624348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.