Evidence map›Paper›PMID 26488648›Full record

ArticleBiophysical journal2015

Cytoskeletal Network Morphology Regulates Intracellular Transport Dynamics.

David Ando, Nickolay Korabel, Kerwyn Casey Huang, Ajay Gopinathan

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
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  8. Diffusive search and trajectories on tubular networks: a propagator approach.The European physical journal. E, Soft matter · 2021
    Article
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  12. Molecular underpinnings of cytoskeletal cross-talk.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  19. System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

David AndoDepartment of Physics, University of California, Merced, California.
Nickolay KorabelDepartment of Physics, University of California, Merced, California; School of Mathematics, University of Manchester, Manchester, United Kingdom.
Kerwyn Casey HuangDepartment of Bioengineering, Stanford University, Stanford, California; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California. Electronic address: kchuang@stanford.edu.
Ajay GopinathanDepartment of Physics, University of California, Merced, California. Electronic address: agopinathan@ucmerced.edu.
University of California, Merced · USStanford Medicine · US

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI FERRELL, JAMES E. · 2013 to 2017
$10.9M
NIGMS NIH HHS P50 GM107615
6 · The paper itself

Abstract

Intracellular transport is essential for maintaining proper cellular function in most eukaryotic cells, with perturbations in active transport resulting in several types of disease. Efficient delivery of critical cargos to specific locations is accomplished through a combination of passive diffusion and active transport by molecular motors that ballistically move along a network of cytoskeletal filaments. Although motor-based transport is known to be necessary to overcome cytoplasmic crowding and the limited range of diffusion within reasonable timescales, the topological features of the cytoskeletal network that regulate transport efficiency and robustness have not been established. Using a continuum diffusion model, we observed that the time required for cellular transport was minimized when the network was localized near the nucleus. In simulations that explicitly incorporated network spatial architectures, total filament mass was the primary driver of network transit times. However, filament traps that redirect cargo back to the nucleus caused large variations in network transport. Filament polarity was more important than filament orientation in reducing average transit times, and transport properties were optimized in networks with intermediate motor on and off rates. Our results provide important insights into the functional constraints on intracellular transport under which cells have evolved cytoskeletal structures, and have potential applications for enhancing reactions in biomimetic systems through rational transport network design.

Indexed as

Biological TransportCell MembraneCell NucleusComputer SimulationCytoplasmCytoskeletonDiffusionModels, Biological

Identifiers

PMID26488648
PMCPMC4624159
OpenAlexW2157273008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.