Evidence map›Paper›PMID 26488576›Full record

ArticlePloS one2015

Genetic Polymorphisms in Vitamin D Metabolism and Signaling Genes and Risk of Breast Cancer: A Nested Case-Control Study.

Tess V Clendenen, Wenzhen Ge, Karen L Koenig, Tomas Axelsson, Mengling Liu, Yelena Afanasyeva, Anne Andersson, Alan A Arslan, Yu Chen, Göran Hallmans and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 5 pooled it
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 5 syntheses or guidelines pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. The Potential Role of Vitamin D inInternational journal of molecular sciences · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Vitamin D Receptor Signaling and Cancer.Endocrinology and metabolism clinics of North America · 2017
    Review
  13. Single-Nucleotide Polymorphisms in Vitamin D-Related Genes May Modify Vitamin D-Breast Cancer Associations.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Tess V ClendenenDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America.
Wenzhen GeDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America.
Karen L KoenigDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America; New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Tomas AxelssonDepartment of Molecular Medicine, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Mengling LiuDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America.
Yelena AfanasyevaDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America.
Anne AnderssonDepartment of Oncology, Umeå University Hospital, Umeå, Sweden.
Alan A ArslanDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America; New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America; Department of Obstetrics and Gynecology, New York University School of Medicine, New York, New York, United States of America.
Yu ChenDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America; New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Göran HallmansDepartment of Public Health and Clinical Medicine/Nutritional Research, Umeå University, Umeå, Sweden.
Per LennerDepartment of Oncology, Umeå University Hospital, Umeå, Sweden.
Tomas KirchhoffDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America.
Eva LundinDepartment of Medical Biosciences/Pathology, Umeå University, Umeå, Sweden.
Roy E ShoreDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America; Radiation Effects Research Foundation, Minami-ku, Hiroshima, Japan.
Malin SundDepartment of Surgery, Umeå University Hospital, Umeå, Sweden.
Anne Zeleniuch-JacquotteDepartment of Population Health, New York University School of Medicine, New York, New York, United States of America; New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
New York University · USUmeå University · SERadiation Effects Research Foundation · JPScience for Life Laboratory · SE

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
RESEARCH IN ENVIRONMENTAL HEALTH SCIENCES (CENTER GRANT)P30ES000260 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 1985 to 2020
$26.1M
Vitamin D, Related Genes and Breast Cancer RiskR01CA098661 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZELENIUCH-JAQUOTTE, ANNE · 2003 to 2013
$9.7M
The NYU Women's Health StudyUM1CA182934 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZELENIUCH-JAQUOTTE, ANNE · 2015 to 2019
$3.7M
NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA098661NCI NIH HHS UM1 CA182934NCI NIH HHS UM1CA182934NIEHS NIH HHS ES000260NIEHS NIH HHS P30 ES000260
6 · The paper itself

Abstract

Genetic polymorphisms in vitamin D metabolism and signaling genes have been inconsistently associated with risk of breast cancer, though few studies have examined SNPs in vitamin D-related genes other than the vitamin D receptor (VDR) gene and particularly have not examined the association with the retinoid X receptor alpha (RXRA) gene which may be a key vitamin D pathway gene. We conducted a nested case-control study of 734 cases and 1435 individually matched controls from a population-based prospective cohort study, the Northern Sweden Mammary Screening Cohort. Tag and functional SNPs were genotyped for the VDR, cytochrome p450 24A1 (CYP24A1), and RXRA genes. We also genotyped specific SNPs in four other genes related to vitamin D metabolism and signaling (GC/VDBP, CYP2R1, DHCR7, and CYP27B1). SNPs in the CYP2R1, DHCR7, and VDBP gene regions that were associated with circulating 25(OH)D concentration in GWAS were also associated with plasma 25(OH)D in our study (p-trend <0.005). After taking into account the false discovery rate, these SNPs were not significantly associated with breast cancer risk, nor were any of the other SNPs or haplotypes in VDR, RXRA, and CYP24A1. We observed no statistically significant associations between polymorphisms or haplotypes in key vitamin D-related genes and risk of breast cancer. These results, combined with the observation in this cohort and most other prospective studies of no association of circulating 25(OH)D with breast cancer risk, do not support an association between vitamin D and breast cancer risk.

Indexed as

25-Hydroxyvitamin D3 1-alpha-HydroxylaseAgedBreast NeoplasmsCase-Control StudiesCholestanetriol 26-MonooxygenaseCohort StudiesCytochrome P450 Family 2FemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansHydroxycholecalciferolsMiddle AgedOxidoreductases Acting on CH-CH Group DonorsPolymorphism, Single Nucleotide25-Hydroxyvitamin D3 1-alpha-Hydroxylase7-dehydrocholesterol reductaseCholestanetriol 26-MonooxygenaseCYP24A1 protein, humanCYP27B1 protein, humanCYP2R1 protein, humanCytochrome P450 Family 2HydroxycholecalciferolsOxidoreductases Acting on CH-CH Group DonorsReceptors, CalcitriolRetinoid X Receptor alphaVitamin D3 24-HydroxylaseVitamin D-Binding Protein

Identifiers

PMID26488576
PMCPMC4619526
OpenAlexW2132377534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.