Evidence map›Paper›PMID 26487705›Full record

ArticlePhysiological genomics2015

Intrauterine growth restriction perturbs nucleosome depletion at a growth hormone-responsive element in the mouse IGF-1 gene.

Robert A McKnight, Christian C Yost, Xing Yu, Julia E Wiedmeier, Christopher W Callaway, Ashley S Brown, Robert H Lane, Camille M Fung

Open access · bronzeAbstract read
In one paragraph

Article in Physiological genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Robert A McKnightDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and robert.mcknight@hsc.utah.edu.ORCID http://orcid.org/0000-0002-1435-6492
Christian C YostDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
Xing YuDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
Julia E WiedmeierDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
Christopher W CallawayDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
Ashley S BrownDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
Robert H LaneDivision of Neonatology, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin.
Camille M FungDivision of Neonatology, Department of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah; and.
University of Utah · USMedical College of Wisconsin · US

Funding

Predicting Lung Chromatin Access Profiling in an Animal ModelR21HD088907 · NICHD · UNIVERSITY OF UTAH · PI ALBERTINE, KURT H, MCKNIGHT, ROBERT ALLEN · 2017 to 2018
$418k
NICHD NIH HHS R21 HD088907
6 · The paper itself

Abstract

Intrauterine growth restriction (IUGR) is a common human pregnancy complication. IUGR offspring carry significant postnatal risk for early-onset metabolic syndrome, which is associated with persistent reduction in IGF-1 protein expression. We have previously shown that preadolescent IUGR male mice have decreased hepatic IGF-1 mRNA and circulating IGF-1 protein at postnatal day 21, the age when growth hormone (GH) normally upregulates hepatic IGF-1 expression. Here we studied nucleosome occupancy and CpG methylation at a putative growth hormone-responsive element in intron 2 (in2GHRE) of the hepatic IGF-1 gene in normal, sham-operated, and IUGR mice. Nucleosome occupancy and CpG methylation were determined in embryonic stem cells (ESCs) and in liver at postnatal days 14, 21, and 42. For CpG methylation, additional time points out to 2 yr were analyzed. We confirmed the putative mouse in2GHRE was GH-responsive, and in normal mice, a single nucleosome was displaced from the hepatic in2GHRE by postnatal day 21, which exposed two STAT5b DNA binding sites. Nucleosome displacement correlated with developmentally programmed CpG demethylation. Finally, IUGR significantly altered the nucleosome-depleted region (NDR) at the in2GHRE of IGF-1 on postnatal day 21, with either complete absence of the NDR or with a shifted NDR exposing only one of two STAT5b DNA binding sites. An NDR shift was also seen in offspring of sham-operated mothers. We conclude that prenatal insult such as IUGR or anesthesia/surgery could perturb the proper formation of a well-positioned NDR at the mouse hepatic IGF-1 in2GHRE necessary for transitioning to an open chromatin state.

Indexed as

AnimalsDNA MethylationFemaleFetal Growth RetardationHuman Growth HormoneHumansInsulin-Like Growth Factor IMiceNucleosomesPregnancyHuman Growth HormoneInsulin-Like Growth Factor INucleosomesDNA methylationintrauterine growth restrictionnucleosome

Identifiers

PMID26487705
PMCPMC9095051
OpenAlexW2375810163

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.