Evidence map›Paper›PMID 26486607›Full record

ArticleBMC genomics2015

Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes.

Miriam L Sharpe, Peter K Dearden, Gregory Gimenez, Kurt L Krause

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  4. Proceedings of the National Academy of Sciences of the United States of America · 2020
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  12. Detection of light and vibration modulates bioluminescence intensity in the glowworm, Arachnocampa flava.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2016
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Miriam L SharpeDepartment of Biochemistry, University of Otago, Dunedin, New Zealand. miriam.sharpe@otago.ac.nz.
Peter K DeardenDepartment of Biochemistry, University of Otago, Dunedin, New Zealand. peter.dearden@otago.ac.nz.
Gregory GimenezOtago Genomics & Bioinformatics Facility, University of Otago, Dunedin, New Zealand. gregory.gimenez@otago.ac.nz.
Kurt L KrauseDepartment of Biochemistry, University of Otago, Dunedin, New Zealand. kurt.krause@otago.ac.nz.
University of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe New Zealand glowworm is the larva of a carnivorous fungus gnat that produces bioluminescence to attract prey. The bioluminescent system of the glowworm is evolutionarily distinct from other well-characterised systems, especially that of the fireflies, and the molecules involved have not yet been identified. We have used high throughput sequencing technology to produce a transcriptome for the glowworm and identify transcripts encoding proteins that are likely to be involved in glowworm bioluminescence.

resultsHere we report the sequencing and annotation of the first transcriptome of the glowworm, and a differential analysis of expression from the glowworm light organ compared with non-light organ tissue. The analysis identified six transcripts encoding proteins that are potentially involved in glowworm bioluminescence. Three of these proteins are members of the ANL superfamily of adenylating enzymes, with similar amino acid sequences to that of the luciferase enzyme found in fireflies (31 to 37 % identical), and are candidate luciferases for the glowworm bioluminescent system. The remaining three transcripts encode putative aminoacylase, phosphatidylethanolamine-binding and glutathione S-transferase proteins.

conclusionsThis research provides a basis for further biochemical studies into how the glowworm produces light, and a source of genetic information to aid future ecological and evolutionary studies of the glowworm.

Indexed as

PhylogenyAnimalsDipteraGlutathione TransferaseHigh-Throughput Nucleotide SequencingLightLuciferasesLuminescent ProteinsNew ZealandRNATranscriptomeGlutathione TransferaseLuciferasesLuminescent ProteinsRNA

Identifiers

PMID26486607
PMCPMC4617951
OpenAlexW1923055835

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.