Evidence map›Paper›PMID 26486099›Full record

ArticleScientific reports2015

Selection of suitable reference genes for normalization of quantitative RT-PCR in peripheral blood samples of bottlenose dolphins (Tursiops truncatus).

I-Hua Chen, Lien-Siang Chou, Shih-Jen Chou, Jiann-Hsiung Wang, Jeffrey Stott, Myra Blanchard, I-Fan Jen, Wei-Cheng Yang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

I-Hua ChenDepartment of Veterinary Medicine, National Chiayi University, Chiayi, 600, Taiwan (R.O.C.).
Lien-Siang ChouInstitute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, 106, Taiwan (R.O.C.).
Shih-Jen ChouDepartment of Veterinary Medicine, National Chiayi University, Chiayi, 600, Taiwan (R.O.C.).
Jiann-Hsiung WangDepartment of Veterinary Medicine, National Chiayi University, Chiayi, 600, Taiwan (R.O.C.).
Jeffrey StottSchool of Veterinary Medicine, University of California, Davis, California, 95616, United States of America.
Myra BlanchardSchool of Veterinary Medicine, University of California, Davis, California, 95616, United States of America.
I-Fan JenFarglory Ocean Park, Hualien, 604, Taiwan (R.O.C.).
Wei-Cheng YangDepartment of Veterinary Medicine, National Chiayi University, Chiayi, 600, Taiwan (R.O.C.).
National Chiayi University · TWUniversity of California, Davis · USNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative RT-PCR is often used as a research tool directed at gene transcription. Selection of optimal housekeeping genes (HKGs) as reference genes is critical to establishing sensitive and reproducible qRT-PCR-based assays. The current study was designed to identify the appropriate reference genes in blood leukocytes of bottlenose dolphins (Tursiops truncatus) for gene transcription research. Seventy-five blood samples collected from 7 bottlenose dolphins were used to analyze 15 candidate HKGs (ACTB, B2M, GAPDH, HPRT1, LDHB, PGK1, RPL4, RPL8, RPL18, RPS9, RPS18, TFRC, YWHAZ, LDHA, SDHA). HKG stability in qRT-PCR was determined using geNorm, NormFinder, BestKeeper and comparative delta Ct algorithms. Utilization of RefFinder, which combined all 4 algorithms, suggested that PGK1, HPRT1 and RPL4 were the most stable HKGs in bottlenose dolphin blood. Gene transcription perturbations in blood can serve as an indication of health status in cetaceans as it occurs prior to alterations in hematology and chemistry. This study identified HKGs that could be used in gene transcript studies, which may contribute to further mRNA relative quantification research in the peripheral blood leukocytes in captive cetaceans.

Indexed as

AnimalsBottle-Nosed DolphinGene Expression ProfilingReal-Time Polymerase Chain ReactionReference StandardsRNA, MessengerRNA, Messenger

Identifiers

PMID26486099
PMCPMC4614023
OpenAlexW2178717578

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.