Evidence map›Paper›PMID 26485616›Full record

ArticleZebrafish2015

Intersectional Gene Expression in Zebrafish Using the Split KalTA4 System.

Rafael Gois Almeida, David Anthony Lyons

Open access · hybridAbstract read
In one paragraph

Article in Zebrafish, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 37 citations in OpenAlex.

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  19. TheFrontiers in neural circuits · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rafael Gois Almeida1 Centre for Neuroregeneration, University of Edinburgh , Edinburgh, United Kingdom .
David Anthony Lyons1 Centre for Neuroregeneration, University of Edinburgh , Edinburgh, United Kingdom .
Mott MacDonald (United Kingdom) · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F023243/1Wellcome Trust 102836Wellcome Trust 102836/Z/13/Z
6 · The paper itself

Abstract

In this study, we describe the adaptation of the split Gal4 system for zebrafish. The Gal4-UAS system is widely used for expression of genes-of-interest by crossing driver lines expressing the transcription factor Gal4 (under the control of the promoter of interest) with reporter lines where upstream activating sequence (UAS) repeats (recognized by Gal4) drive expression of the genes-of-interest. In the Split Gal4 system, hemi-drivers separately encode the DNA-binding domain (DBD) and the activation domain (AD) of Gal4. When encoded under two different promoters, only those cells in the intersection of the promoters' expression pattern and in which both promoters are active reconstitute a functional Gal4 and activate expression from a UAS-driven transgene. We split the zebrafish-optimized version of Gal4, KalTA4, and generated a hemi-driver encoding the KalTA4 DBD and a hemi-driver encoding KalTA4's AD. We show that split KalTA4 domains can assemble in vivo and transactivate a UAS reporter transgene and that each hemi-driver alone cannot transactivate the reporter. Also, transactivation can happen in several cell types, with similar efficiency to intact KalTA4. Finally, in transient mosaic expression assays, we show that when hemi-drivers are preceded by two distinct promoters, they restrict the expression of an UAS-driven reporter from a broader pattern (sox10) to its constituent smaller neuronal pattern. The Split KalTA4 system should be useful for expression of genes-of-interest in an intersectional manner, allowing for more refined manipulations of cell populations in zebrafish.

Indexed as

AnimalsAnimals, Genetically ModifiedDNA-Binding ProteinsEmbryo, NonmammalianGene Expression RegulationGenes, ReporterGreen Fluorescent ProteinsPlasmidsPromoter Regions, GeneticProtein Structure, TertiarySOXE Transcription FactorsTrans-ActivatorsTranscription FactorsZebrafishZebrafish ProteinsDNA-Binding Proteinsenhanced green fluorescent proteinGal4 protein, zebrafishGreen Fluorescent Proteinssox10 protein, zebrafishSOXE Transcription FactorsTrans-ActivatorsTranscription FactorsZebrafish Proteins

Identifiers

PMID26485616
PMCPMC4677521
OpenAlexW1790989429

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.