Evidence map›Paper›PMID 26485279›Full record

SynthesisPloS one2015

Vitamin D Receptor Gene FOKI Polymorphism Contributes to Increasing the Risk of HIV-Negative Tuberculosis: Evidence from a Meta-Analysis.

Chun Xu, Peijun Tang, Cheng Ding, Chang Li, Jun Chen, Zhenlei Xu, Yi Mao, Meiying Wu, Jun Zhao

Open access · goldAbstract readMeta-AnalysisSystematic Review
In one paragraph

Synthesis in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 3 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 3 syntheses or guidelines pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Inter-individual variation in health and disease associated with pulmonary infectious agents.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  7. Observational
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chun XuDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Peijun TangDepartment of Tuberculosis, The Affiliated Infectious Hospital of Soochow University, Soochow, Jiangsu, People's Republic of China.
Cheng DingDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Chang LiDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Jun ChenDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Zhenlei XuDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Yi MaoDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Meiying WuDepartment of Tuberculosis, The Affiliated Infectious Hospital of Soochow University, Soochow, Jiangsu, People's Republic of China.
Jun ZhaoDepartment of Cardiothoracic Surgery, The First Hospital Affiliated to Soochow University, Soochow, Jiangsu, People's Republic of China.
Soochow University · CNFirst Affiliated Hospital of Soochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVitamin D receptor (VDR) gene FokI polymorphism have been studied in relation to tuberculosis (TB) in many populations and provided inconsistent results. In this study, we carried out a meta-analysis to derive a more reliable assessment on FokI polymorphism and the risk of HIV-negative TB.

methodsThe Embase, PubMed, and Cochrane Library databases were used to undertake a comprehensive systematic literature review of all current published VDR gene FOKI association studies aimed at the risk of TB up to June 30, 2015. Odds ratios (ORs) and the corresponding 95% confidence intervals (CIs) were used to measure the strength of the models.

resultsA total of 14 studies (1,668 cases and 1,893 controls) were retrieved in the meta-analysis. The pooled OR was 1.60 (95% = 1.28-1.97, P<0.001; I2 = 29.5%, and P = 0.141 for heterogeneity) in the best genetic model (recessive model: ff vs. fF+FF). In the subgroup analysis by ethnicities, a significantly increased risk was found in the Asian group (OR = 1.82, 95% CI = 1.42-2.33, P<0.001; I2 = 31.0%, and P = 0.150 for heterogeneity) in the recessive model. Similarly, significant associations were also found in the polymerase chain reaction-restriction fragment length polymorphism group, high-quality studies, and the population based or hospital based groups. Moderate heterogeneity was found in this study.

conclusionOur results suggested that VDR FokI polymorphism contributes to increasing the risk of TB in HIV-negative individuals, especially in the Asian region. Further studies on this topic in other races are expected to be conducted in future.

Indexed as

Polymorphism, Single NucleotideCase-Control StudiesGenetic Predisposition to DiseaseGenotypeHumansReceptors, CalcitriolRiskTuberculosisReceptors, Calcitriol

Identifiers

PMID26485279
PMCPMC4618110
OpenAlexW2181060989

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.