Evidence map›Paper›PMID 26484871›Full record

ArticlePloS one2015

Transcriptome Analysis in Haematococcus pluvialis: Astaxanthin Induction by Salicylic Acid (SA) and Jasmonic Acid (JA).

Zhengquan Gao, Yan Li, Guanxun Wu, Guoqiang Li, Haifeng Sun, Suzhen Deng, Yicheng Shen, Guoqiang Chen, Ruihao Zhang, Chunxiao Meng and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Microbial astaxanthin: from bioprocessing to the market recognition.Applied microbiology and biotechnology · 2023
    Review
  8. Review
  9. Article
  10. Research of Fluridone's Effects on Growth and Pigment Accumulation ofInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. The Histone AcetyltransferaseFrontiers in plant science · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Frontiers in plant science · 2021
    Article
  19. Transcription Factors FromFrontiers in bioengineering and biotechnology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Zhengquan GaoSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Yan LiCollege of Marine and Environmental Sciences, James Cook University, Douglas, 4811, Australia; School of Food and Agriculture Sciences, University of Queensland, St. Lucia, 4072, Australia.
Guanxun WuSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Guoqiang LiSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Haifeng SunSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Suzhen DengSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Yicheng ShenSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Guoqiang ChenSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Ruihao ZhangSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Chunxiao MengSchool of Life Sciences, Shandong University of Technology, Zibo, 255049, P.R. China.
Xiaowen ZhangYellow Sea Fishery Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, P.R. China.
Shandong University of Technology · CNChinese Academy of Fishery Sciences · CNUniversity of Queensland · AU

Funding

Mechanisms of Behavior Change Resource Core for Alcohol-HIV InterventionsU24AA022003 · NIAAA · BROWN UNIVERSITY · PI KAHLER, CHRISTOPHER W. · 2012 to 2020
$5.9M
NIAAA NIH HHS U24 AA022003
6 · The paper itself

Abstract

Haematococcus pluvialis is an astaxanthin-rich microalga that can increase its astaxanthin production by salicylic acid (SA) or jasmonic acid (JA) induction. The genetic transcriptome details of astaxanthin biosynthesis were analyzed by exposing the algal cells to 25 mg/L of SA and JA for 1, 6 and 24 hours, plus to the control (no stress). Based on the RNA-seq analysis, 56,077 unigenes (51.7%) were identified with functions in response to the hormone stress. The top five identified subcategories were cell, cellular process, intracellular, catalytic activity and cytoplasm, which possessed 5600 (~9.99%), 5302 (~9.45%), 5242 (~9.35%), 4407 (~7.86%) and 4195 (~7.48%) unigenes, respectively. Furthermore, 59 unigenes were identified and assigned to 26 putative transcription factors (TFs), including 12 plant-specific TFs. They were likely associated with astaxanthin biosynthesis in Haematococcus upon SA and JA stress. In comparison, the up-regulation of differential expressed genes occurred much earlier, with higher transcript levels in the JA treatment (about 6 h later) than in the SA treatment (beyond 24 h). These results provide valuable information for directing metabolic engineering efforts to improve astaxanthin biosynthesis in H. pluvialis.

Indexed as

ChlorophytaCyclopentanesGene Expression ProfilingGene Expression RegulationMicroalgaeOxylipinsSalicylic AcidTranscriptomeUp-RegulationXanthophyllsastaxanthineCyclopentanesjasmonic acidOxylipinsSalicylic AcidXanthophylls

Identifiers

PMID26484871
PMCPMC4979887
OpenAlexW2104778104

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.