Evidence map›Paper›PMID 26484295›Full record

ArticleGenomics data2015

Transcriptome profiling of white adipose tissue in a mouse model for 15q duplication syndrome.

Xiaoxi Liu, Kota Tamada, Rui Kishimoto, Hiroko Okubo, Satoko Ise, Hisashi Ohta, Sandra Ruf, Jin Nakatani, Nobuoki Kohno, François Spitz and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Xiaoxi LiuRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.
Kota TamadaRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan ; Graduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan.
Rui KishimotoRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan ; Graduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan.
Hiroko OkuboRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.
Satoko IseBanyu Tsukuba Research Institute, Tsukuba, Ibaraki 300-2611, Japan.
Hisashi OhtaBanyu Tsukuba Research Institute, Tsukuba, Ibaraki 300-2611, Japan.
Sandra RufDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Jin NakataniMolecular Neuroscience Research Center, Shiga University of Medical Science, Ohtsu, Shiga 520-2192, Japan.
Nobuoki KohnoGraduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan.
François SpitzDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Toru TakumiRIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan ; Graduate School of Biomedical Sciences, Hiroshima University, Minami, Hiroshima 734-8553, Japan ; JST, CREST, Japan.
RIKEN Center for Brain Science · JPEuropean Molecular Biology Laboratory · DEFood Research Institute · JPHiroshima University · JPShiga University of Medical Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Obesity is not only associated with unhealthy lifestyles, but also linked to genetic predisposition. Previously, we generated an autism mouse model (patDp/+) that carries a 6.3 Mb paternal duplication homologous to the human 15q11-q13 locus. Chromosomal abnormalities in this region are known to cause autism spectrum disorder, Prader-Willi syndrome, and Angelman syndrome in humans. We found that, in addition to autistic-like behaviors, patDp/+ mice display late-onset obesity and hypersensitivity to a high-fat diet. These phenotypes are likely to be the results of genetic perturbations since the energy expenditures and food intakes of patDp/+ mice do not significantly differ from those of wild-type mice. Intriguingly, we found that an enlargement of adipose cells precedes the onset of obesity in patDp/+ mice. To understand the underlying molecular networks responsible for this pre-obese phenotype, we performed transcriptome profiling of white adipose tissue from patDp/+ and wild-type mice using microarray. We identified 230 genes as differentially expressed genes. Sfrp5 - a gene whose expression is positively correlated with adipocyte size, was found to be up-regulated, and Fndc5, a potent inducer of brown adipogenesis was identified to be the top down-regulated gene. Subsequent pathway analysis highlighted a set of 35 molecules involved in energy production, lipid metabolism, and small molecule biochemistry as the top candidate biological network responsible for the pre-obese phenotype of patDp/+. The microarray data were deposited in NCBI Gene Expression Omnibus database with accession number GSE58191. Ultimately, our dataset provides novel insights into the molecular mechanism of obesity and demonstrated that patDp/+ is a valuable mouse model for obesity research.

Indexed as

15q duplication syndromeFndc5MicroarrayObesitySfrp5

Identifiers

PMID26484295
PMCPMC4583688
OpenAlexW2102887032

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.