Evidence map›Paper›PMID 26484255›Full record

ArticleGenomics data2015

Metagenomic analysis of bacterial and archaeal assemblages in the soil-mousse surrounding a geothermal spring.

Sonu Bhatia, Navneet Batra, Ashish Pathak, Amit Joshi, Leila Souza, Paulo Almeida, Ashvini Chauhan

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sonu BhatiaDepartment of Biotechnology, GGDSD College, Sector 32-C, Chandigarh, India.
Navneet BatraDepartment of Biotechnology, GGDSD College, Sector 32-C, Chandigarh, India.
Ashish PathakSchool of the Environment, Environmental Biotechnology and Genomics Lab, 1515 S. MLK Blvd., Suite 305B, Building FSHSRC, Florida Agricultural and Mechanical University, Tallahassee, FL 32307, USA.
Amit JoshiDepartment of Biotechnology, SGGS College, Sector 26, Chandigarh, India.
Leila SouzaLaboratory of Biotechnology and Ecology of Microorganisms, Department of Biointeraction, Federal University of Bahia, Bahia, Brazil.
Paulo AlmeidaLaboratory of Biotechnology and Ecology of Microorganisms, Department of Biointeraction, Federal University of Bahia, Bahia, Brazil.
Ashvini ChauhanSchool of the Environment, Environmental Biotechnology and Genomics Lab, 1515 S. MLK Blvd., Suite 305B, Building FSHSRC, Florida Agricultural and Mechanical University, Tallahassee, FL 32307, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soil-mousse surrounding a geothermal spring was analyzed for bacterial and archaeal diversity using 16S rRNA gene amplicon metagenomic sequencing which revealed the presence of 18 bacterial phyla distributed across 109 families and 219 genera. Firmicutes, Actinobacteria, and the Deinococcus-Thermus group were the predominant bacterial assemblages with Crenarchaeota and Thaumarchaeota as the main archaeal assemblages in this largely understudied geothermal habitat. Several metagenome sequences remained taxonomically unassigned suggesting the presence of a repertoire of hitherto undescribed microbes in this geothermal soil-mousse econiche.

Indexed as

ArchaeaBacteriaGeothermal springMetagenome

Identifiers

PMID26484255
PMCPMC4583632

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.