Evidence map›Paper›PMID 26484247›Full record

ArticleGenomics data2015

Transcriptomics analyses of soybean leaf and root samples during water-deficit.

Prateek Tripathi, Roel C Rabara, Qingxi J Shen, Paul J Rushton

Abstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Comprehensive mapping of abiotic stress inputs into the soybean circadian clock.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Prateek TripathiMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089, USA.
Roel C RabaraTexas A&M AgriLife Research & Extension Center Dallas, TX 75252, USA.
Qingxi J ShenSchool of Life Sciences, University of Nevada, Las Vegas, NV 89154, USA.
Paul J RushtonTexas A&M AgriLife Research & Extension Center Dallas, TX 75252, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought being a major challenge for crop productivity and yield affects multigenic and quantitative traits. It is also well documented that water stress shows a cross talk with other abiotic stresses such as high temperature and high light intensities (Tripathi et al., 2013) [1]. In this report, we documented the details of the methods and quality controls used and considered in our time course-based transcriptome profile of soybean plants under water deficit conditions using microarray technology. The findings of this study are recently published by the Rushton lab in BMC Genomics for a comparative study of tobacco and Soybean (Rabara et al., 2015) [2]. The raw microarray data set is deposited in GEO database with accession number GSE49537.

Indexed as

DroughtGenomicsMicroarraySoybeanTranscriptomicsWRKY

Identifiers

PMID26484247
PMCPMC4583655

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.