ArticleGenomics data2015
Shotgun metagenomic sequencing based microbial diversity assessment of Lasundra hot spring, India.
Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed.
- Microbial diversity analysis of Chumathang geothermal spring, Ladakh, India.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024Article
- Building the taxonomic profile of the Riniaie Marwah hot spring of Kishtwar in Jammu and Kashmir: the first high-throughput sequencing-based metagenome study.Iranian journal of microbiology · 2023Article
- Unveiling the microbial diversity and functional dynamics of Shiv Kund, Sohna hot spring, India through a shotgun metagenomics approach.Archives of microbiology · 2023Article
- Bacterial Communities Along Environmental Gradients in Tropical Soda Lakes.Microbial ecology · 2023Article
- Bacterial diversity in the aquatic system in India based on metagenome analysis-a critical review.Environmental science and pollution research international · 2023Review
- Decoding the microbial universe with metagenomics: a brief insight.Frontiers in genetics · 2023Review
- Coexistence of Heavy Metal Tolerance and Antibiotic Resistance in Thermophilic Bacteria Belonging to GenusFrontiers in microbiology · 2022Article
- Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases.Scientific reports · 2021Article
- Physicochemical and Microbial Diversity Analyses of Indian Hot Springs.Frontiers in microbiology · 2021Article
- Comparative Metagenomic Analysis of Two Hot Springs From Ourense (Northwestern Spain) and Others Worldwide.Frontiers in microbiology · 2021Article
- Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade.Indian journal of microbiology · 2020Review
- Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes.BMC genomics · 2019Article
- Uncovering bacterial and functional diversity in macroinvertebrate mitochondrial-metagenomic datasets by differential centrifugation.Scientific reports · 2019Article
- Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis.Journal of microbiology (Seoul, Korea) · 2019Article
- Article
- Structural insights of microbial community of Deulajhari (India) hot spring using 16s-rRNA based metagenomic sequencing.Genomics data · 2016Article
- Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes.Frontiers in microbiology · 2016Review
- Web Resources for Metagenomics Studies.Genomics, proteomics & bioinformatics · 2015Review
- Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India.Genomics data · 2015Article
- Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach.Genomics data · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This is the first report on the metagenomic approach for unveiling the microbial diversity of Lasundra hot spring, Gujarat State, India. High-throughput sequencing of community DNA was performed on an Ion Torrent PGM platform. Metagenome consisted of 606,867 sequences represent 98,567,305 bps size with an average length of 162 bps and 46% G + C content. Metagenome sequence information is available at EBI under EBI Metagenomic database with accession no. ERP009313. MG-RAST assisted community analysis revealed that 99.21% sequences were bacterial origin, 0.43% was fit to eukaryotes and 0.11% belongs to archaea. A total of 29 bacterial, 20 eukaryotic and 4 archaeal phyla were detected. Abundant genera were Bacillus (86.7%), Geobacillus (2.4%), Paenibacillus (1.0%), Clostridium (0.7%) and Listeria (0.5%), that represent 91.52% in metagenome. In functional analysis, Cluster of Orthologous Group (COG) based annotation revealed that 45.4% was metabolism connected and 19.6% falls in poorly characterized group. Subsystem based annotation approach suggests that the 14.0% was carbohydrates, 7.0% was protein metabolism and 3.0% genes for various stress responses together with the versatile presence of commercially useful traits.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.