Evidence map›Paper›PMID 26484170›Full record

ArticleGenomics data2015

Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1.

Ivan Wawrzyniak, Damien Courtine, Marwan Osman, Christine Hubans-Pierlot, Amandine Cian, Céline Nourrisson, Magali Chabe, Philippe Poirier, Aldert Bart, Valérie Polonais and 8 more

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Ivan WawrzyniakClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Damien CourtineClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Marwan OsmanInstitut Pasteur de Lille, Centre d'Infection et d'Immunité de Lille, Inserm U1019, CNRS UMR 8204, Université Lille, Nord de France, France.
Christine Hubans-PierlotGenoscreen Institut Pasteur, Lille, France.
Amandine CianInstitut Pasteur de Lille, Centre d'Infection et d'Immunité de Lille, Inserm U1019, CNRS UMR 8204, Université Lille, Nord de France, France.
Céline NourrissonClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Magali ChabeInstitut Pasteur de Lille, Centre d'Infection et d'Immunité de Lille, Inserm U1019, CNRS UMR 8204, Université Lille, Nord de France, France.
Philippe PoirierClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Aldert BartDepartment of Medical Microbiology, Section Parasitology, Center for Infection and Immunity Amsterdam, Academic Medical Center, Amsterdam, The Netherlands.
Valérie PolonaisClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Pilar Delgado-ViscogliosiInstitut Pasteur de Lille, Centre d'Infection et d'Immunité de Lille, Inserm U1019, CNRS UMR 8204, Université Lille, Nord de France, France.
Hicham El AlaouiClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Abdel BelkorchiaClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Tom van GoolDepartment of Medical Microbiology, Section Parasitology, Center for Infection and Immunity Amsterdam, Academic Medical Center, Amsterdam, The Netherlands.
Kevin S W TanLaboratory of Molecular and Cellular Parasitology, Department of Microbiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore.
Stéphanie FerreiraGenoscreen Institut Pasteur, Lille, France.
Eric ViscogliosiInstitut Pasteur de Lille, Centre d'Infection et d'Immunité de Lille, Inserm U1019, CNRS UMR 8204, Université Lille, Nord de France, France.
Frédéric DelbacClermont Université, Université Blaise Pascal-Université d'Auvergne-CNRS, UMR 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Centre National de la Recherche Scientifique · FRAmsterdam UMC Location University of Amsterdam · NLInstitut Pasteur de Lille · FRNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The intestinal protistan parasite Blastocystis is characterized by an extensive genetic variability with 17 subtypes (ST1-ST17) described to date. Only the whole genome of a human ST7 isolate was previously sequenced. Here we report the draft genome sequence of Blastocystis ST4-WR1 isolated from a laboratory rodent at Singapore.

Indexed as

Annotation using Maker gene annotation pipelineBlastocystis subtype 4-isolate WR1Illumina-HiSeqWhole genome

Identifiers

PMID26484170
PMCPMC4535960
OpenAlexW1992816809

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.