Evidence map›Paper›PMID 26484103›Full record

ArticleGenomics data2014

The HER2 amplicon includes several genes required for the growth and survival of HER2 positive breast cancer cells - A data description.

Vesa Hongisto, Miriam Ragle Aure, Rami Mäkelä, Kristine Kleivi Sahlberg

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Vesa HongistoVTT Technical Research Centre of Finland, Turku, Finland.
Miriam Ragle AureK.G. Jebsen Centre of Breast Cancer, Department of Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.
Rami MäkeläVTT Technical Research Centre of Finland, Turku, Finland.
Kristine Kleivi SahlbergK.G. Jebsen Centre of Breast Cancer, Department of Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway ; Department of Research, VestreViken, Drammen, Norway.
VTT Technical Research Centre of Finland · FIDrammen Hospital · NOOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A large number of breast cancers are characterized by amplification and overexpression of the chromosome segment surrounding the HER2 (ERBB2) oncogene. As the HER2 amplicon at 17q12 contains multiple genes, we have systematically explored the role of the HER2 co-amplified genes in breast cancer cell growth and their relation to trastuzumab resistance. We integrated array comparative genomic hybridization (aCGH) data of the HER2 amplicon from 71 HER2 positive breast tumors and 10 cell lines with systematic functional RNA interference analysis of 23 core amplicon genes with several phenotypic endpoints in a panel of trastuzumab responding and non-responding HER2 positive breast cancer cells. In this Data in Brief we give a detailed description of the experimental procedures and the data analysis methods used in the study (1).

Indexed as

aCGHDrug treatmentHER2 positive breast cancerLysate microarraysSiRNA

Identifiers

PMID26484103
PMCPMC4536024
OpenAlexW2113165452

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.