Evidence map›Paper›PMID 26484097›Full record

ArticleGenomics data2014

Genome comparison of Listeria monocytogenes serotype 4a strain HCC23 with selected lineage I and lineage II L. monocytogenes strains and other Listeria strains.

Debarati Paul, Chelsea Steele, Janet R Donaldson, Michelle M Banes, Ranjit Kumar, Susan M Bridges, Mark Arick, Mark L Lawrence

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genomics data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. PersistentPathogens (Basel, Switzerland) · 2019
    Article
  3. Characterization ofFoods (Basel, Switzerland) · 2019
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Debarati PaulAmity Institute of Biotechnology, Amity University, Noida, India.
Chelsea SteeleCollege of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Janet R DonaldsonDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, USA.
Michelle M BanesCollege of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Ranjit KumarCollege of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Susan M BridgesDepartment of Computer Sciences and Engineering, Mississippi State University, Mississippi State, MS, USA.
Mark ArickInstitute for Genomics, Biocomputing, and Biotechnology, Mississippi State University, Mississippi State, MS, USA.
Mark L LawrenceCollege of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

More than 98% of reported human listeriosis cases are caused by specific serotypes within genetic lineages I and II. The genome sequence of Listeria monocytogenes lineage III strain HCC23 (serotype 4a) enables whole genomic comparisons across all three L. monocytogenes lineages. Protein cluster analysis indicated that strain HCC23 has the most unique protein pairs with nonpathogenic species Listeria innocua. Orthology analysis of the genome sequences of representative strains from the three L. monocytogenes genetic lineages and L. innocua (CLIP11262) identified 319 proteins unique to nonpathogenic strains HCC23 and CLIP11262 and 58 proteins unique to pathogenic strains F2365 and EGD-e. BLAST comparison of these proteins with all the sequenced L. monocytogenes and L. innocua revealed 126 proteins unique to serotype 4a and/or L. innocua; 14 proteins were only found in pathogenic serotypes. Some of the 58 proteins unique to pathogenic strains F2365 and EGD-e were previously published and are already known to contribute to listerial virulence.

Indexed as

Comparative genomicsGenetic lineageListeria monocytogenesVirulence

Identifiers

PMID26484097
PMCPMC4536003

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.