Evidence map›Paper›PMID 26484070›Full record

ArticleGenomics data2014

A definitive haplotype map of structural variations determined by microarray analysis of duplicated haploid genomes.

Tomoko Tahira, Koji Yahara, Yoji Kukita, Koichiro Higasa, Kiyoko Kato, Norio Wake, Kenshi Hayashi

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genomics data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Tomoko TahiraMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Koji YaharaBiostatistics Center, Kurume University, Kurume, Japan.
Yoji KukitaMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan ; Research Institute, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka, Japan.
Koichiro HigasaMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan ; Center for Genomic Medicine, Kyoto University, Kyoto, Japan.
Kiyoko KatoGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Norio WakeGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Kenshi HayashiMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Kyushu University · JPKurume University · JPOsaka Medical Center for Cancer and Cardiovascular Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Complete hydatidiform moles (CHMs) are tissues carrying duplicated haploid genomes derived from single sperms, and detecting copy number variations (CNVs) in CHMs is assumed to be sensitive and straightforward methods. We genotyped 108 CHM genomes using Affymetrix SNP 6.0 (GEO#: GSE18642) and Illumina 1 M-duo (GEO#: GSE54948). After quality control, we obtained 84 definitive haplotype consisting of 1.7 million SNPs and 2339 CNV regions. The results are presented in the database of our web site (http://orca.gen.kyushu-u.ac.jp/cgi-bin/gbrowse/humanBuild37D4_1/).

Indexed as

Complete hydatidiform molesCopy Number VariationDefinitive haplotypesLD-binSingle nucleotide polymorphism

Identifiers

PMID26484070
PMCPMC4535890
OpenAlexW2121590879

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.