Evidence map›Paper›PMID 26483767›Full record

ArticleFrontiers in microbiology2015

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Luca Freschi, Julie Jeukens, Irena Kukavica-Ibrulj, Brian Boyle, Marie-Josée Dupont, Jérôme Laroche, Stéphane Larose, Halim Maaroufi, Joanne L Fothergill, Matthew Moore and 48 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 159 citations in OpenAlex.

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  15. Genomic characterization ofMicrobial genomics · 2025
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  19. International journal of microbiology · 2024
    Article
  20. Complete genome sequence ofMicrobiology resource announcements · 2023
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

58 authors at 20 institutions in 9 countries.

Luca FreschiInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Julie JeukensInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Irena Kukavica-IbruljInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Brian BoyleInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Marie-Josée DupontInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Jérôme LarocheInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Stéphane LaroseInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Halim MaaroufiInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Joanne L FothergillInstitute of Infection and Global Health, University of Liverpool Liverpool, UK.
Matthew MooreInstitute of Infection and Global Health, University of Liverpool Liverpool, UK.
Geoffrey L WinsorDepartment of Molecular Biology and Biochemistry, Simon Fraser University Vancouver, BC, Canada.
Shawn D AaronOttawa Hospital Research Institute Ottawa, ON, Canada.
Jean BarbeauFaculté de Médecine Dentaire, Université de Montréal Montréal, QC, Canada.
Scott C BellQIMR Berghofer Medical Research Institute Brisbane, QLD, Australia.
Jane L BurnsSeattle Children's Research Institute, University of Washington School of Medicine Seattle, WA, USA.
Miguel CamaraSchool of Life Sciences, University of Nottingham Nottingham, UK.
André CantinDépartement de Médecine, Université de Sherbrooke Sherbrooke, QC, Canada.
Steve J CharetteInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada ; Centre de Recherche de l'Institut Universitaire de Cardiologie et de Pneumologie de Québec Quebec, QC, Canada ; Département de Biochimie, de Microbiologie et de Bio-informatique, Faculté des Sciences et de Génie, Université Laval Quebec, QC, Canada.
Ken DewarDepartment of Human Genetics, McGill University Montreal, QC, Canada.
Éric DézielINRS Institut Armand Frappier Laval, QC, Canada.
Keith GrimwoodSchool of Medicine, Griffith University Gold Coast, QLD, Australia.
Robert E W HancockDepartment of Microbiology and Immunology, University of British Columbia Vancouver, BC, Canada.
Joe J HarrisonBiological Sciences, University of Calgary Calgary, AB, Canada.
Stephan HeebSchool of Life Sciences, University of Nottingham Nottingham, UK.
Lars JelsbakDepartment of Systems Biology, Technical University of Denmark Lyngby, Denmark.
Baofeng JiaM.G. DeGroote Institute for Infectious Disease Research, McMaster University Hamilton, ON, Canada.
Dervla T KennaAntimicrobial Resistance and Healthcare Associated Infections Reference Unit, Public Health England London, UK.
Timothy J KiddChild Health Research Centre, The University of Queensland Brisbane, QLD, Australia ; Centre for Infection and Immunity, Queen's University Belfast Belfast, UK.
Jens KlockgetherKlinische Forschergruppe, Medizinische Hochschule Hannover, Germany.
Joseph S LamDepartment of Molecular and Cellular Biology, University of Guelph Guelph, ON, Canada.
Iain L LamontDepartment of Biochemistry, University of Otago Dunedin, New Zealand.
Shawn LewenzaBiological Sciences, University of Calgary Calgary, AB, Canada.
Nick LomanInstitute for Microbiology and Infection, University of Birmingham Birmingham, UK.
François MalouinDépartement de Médecine, Université de Sherbrooke Sherbrooke, QC, Canada.
Jim ManosDepartment of Infectious Diseases and Immunology, The University of Sydney Sydney, NSW, Australia.
Andrew G McArthurM.G. DeGroote Institute for Infectious Disease Research, McMaster University Hamilton, ON, Canada.
Josie McKeownSchool of Life Sciences, University of Nottingham Nottingham, UK.
Julie MilotDepartment of Pneumology, Institut Universitaire de Cardiologie et de Pneumologie de Québec, Université Laval Quebec, QC, Canada.
Hardeep NaghraSchool of Life Sciences, University of Nottingham Nottingham, UK.
Dao NguyenDepartment of Human Genetics, McGill University Montreal, QC, Canada ; Department of Microbiology and Immunology and Department of Experimental Medicine, McGill University Montreal, QC, Canada.
Sheldon K PereiraM.G. DeGroote Institute for Infectious Disease Research, McMaster University Hamilton, ON, Canada.
Gabriel G PerronDepartment of Biology, Bard College, Annandale-On-Hudson NY, USA.
Jean-Paul PirnayLaboratory for Molecular and Cellular Technology, Queen Astrid Military Hospital Brussels, Belgium.
Paul B RaineyNew Zealand Institute for Advanced Study, Massey University Albany, New Zealand ; Max Planck Institute for Evolutionary Biology Plön, Germany.
Simon RousseauDepartment of Human Genetics, McGill University Montreal, QC, Canada.
Pedro M SantosDepartment of Biology, University of Minho Braga, Portugal.
Anne StephensonSt. Michael's Hospital Toronto, ON, Canada.
Véronique TaylorDepartment of Molecular and Cellular Biology, University of Guelph Guelph, ON, Canada.
Jane F TurtonAntimicrobial Resistance and Healthcare Associated Infections Reference Unit, Public Health England London, UK.
Nicholas WaglechnerM.G. DeGroote Institute for Infectious Disease Research, McMaster University Hamilton, ON, Canada.
Paul WilliamsSchool of Life Sciences, University of Nottingham Nottingham, UK.
Sandra W ThraneDepartment of Systems Biology, Technical University of Denmark Lyngby, Denmark.
Gerard D WrightM.G. DeGroote Institute for Infectious Disease Research, McMaster University Hamilton, ON, Canada.
Fiona S L BrinkmanDepartment of Molecular Biology and Biochemistry, Simon Fraser University Vancouver, BC, Canada.
Nicholas P TuckerStrathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde Glasgow, UK.
Burkhard TümmlerKlinische Forschergruppe, Medizinische Hochschule Hannover, Germany.
Craig WinstanleyInstitute of Infection and Global Health, University of Liverpool Liverpool, UK.
Roger C LevesqueInstitute for Integrative and Systems Biology, Université Laval Quebec, QC, Canada.
Université Laval · CAMcMaster University · CAUniversity of Nottingham · GBMcGill University · CAUniversity of Liverpool · GBMedizinische Hochschule Hannover · DEPublic Health England · GBSimon Fraser University · CATechnical University of Denmark · DKUniversité de Sherbrooke · CAUniversity of Calgary · CAUniversity of Guelph · CAArmand Frappier Museum · CABard College · USGriffith University · AUInstitut universitaire de cardiologie et de pneumologie de Québec · CAMassey University · NZOttawa Hospital Research InstituteQIMR Berghofer Medical Research Institute · AUQueen Astrid Military Hospital · BE

Funding

Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Christopher Hooper Goss, Lucas R Hoffman · 2010 to 2026
$21.4M
Medical Research Council MR/M501621/1NIDDK NIH HHS P30 DK089507
6 · The paper itself

Abstract

The International Pseudomonas aeruginosa Consortium is sequencing over 1000 genomes and building an analysis pipeline for the study of Pseudomonas genome evolution, antibiotic resistance and virulence genes. Metadata, including genomic and phenotypic data for each isolate of the collection, are available through the International Pseudomonas Consortium Database (http://ipcd.ibis.ulaval.ca/). Here, we present our strategy and the results that emerged from the analysis of the first 389 genomes. With as yet unmatched resolution, our results confirm that P. aeruginosa strains can be divided into three major groups that are further divided into subgroups, some not previously reported in the literature. We also provide the first snapshot of P. aeruginosa strain diversity with respect to antibiotic resistance. Our approach will allow us to draw potential links between environmental strains and those implicated in human and animal infections, understand how patients become infected and how the infection evolves over time as well as identify prognostic markers for better evidence-based decisions on patient care.

Indexed as

antibiotic resistancebacterial genomeclinical microbiologycystic fibrosisdatabasenext-generation sequencingphylogenyPseudomonas aeruginosa

Identifiers

PMID26483767
PMCPMC4586430
OpenAlexW2150766693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.