ArticleG3 (Bethesda, Md.)2015
Development of INDEL Markers for Genetic Mapping Based on Whole Genome Resequencing in Soybean.
Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 71 citations in OpenAlex.
- StablePlants (Basel, Switzerland) · 2026Article
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- Molecular and genetic basis of plant architecture in soybean.Frontiers in plant science · 2024Review
- A Genomic Evaluation of Six Selected Inbred Lines of the Naturalized Plants of Milk Thistle (Plants (Basel, Switzerland) · 2023Article
- Molecular Characterization and Genetic Diversity of Ginkgo (Plants (Basel, Switzerland) · 2023Article
- Identification of Soybean Mutant Lines Based on Dual-Branch CNN Model Fusion Framework Utilizing Images from Different Organs.Plants (Basel, Switzerland) · 2023Article
- Development of Omni InDel and supporting database for maize.Frontiers in plant science · 2023Article
- Genome-wide identification and development of InDel markers in tobacco (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Genetic Mapping of theFrontiers in plant science · 2022Article
- GmCCD4 controls carotenoid content in soybeans.Plant biotechnology journal · 2021Article
- Development and validation of genome-wide InDel markers with high levels of polymorphism in bitter gourd (Momordica charantia).BMC genomics · 2021Article
- Agarose-resolvable InDel markers based on whole genome re-sequencing in cucumber.Scientific reports · 2021Article
- Article
- A malectin-like receptor kinase regulates cell death and pattern-triggered immunity in soybean.EMBO reports · 2020Article
- Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches.BMC plant biology · 2020Article
- GmNAP1 is essential for trichome and leaf epidermal cell development in soybean.Plant molecular biology · 2020Article
- Development of Whole-Genome Agarose-Resolvable LInDel Markers in Rice.Rice (New York, N.Y.) · 2020Article
- Genetic Mapping of a Light-Dependent Lesion Mimic Mutant Reveals the Function of Coproporphyrinogen III Oxidase Homolog in Soybean.Frontiers in plant science · 2020Article
- A cost-effective barcode system for maize genetic discrimination based on bi-allelic InDel markers.Plant methods · 2020Article
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Authors and funding
9 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soybean [Glycine max (L.) Merrill] is an important crop worldwide. In this study, a Chinese local soybean cultivar, Hedou 12, was resequenced by next generation sequencing technology to develop INsertion/DELetion (INDEL) markers for genetic mapping. 49,276 INDEL polymorphisms and 242,059 single nucleotide polymorphisms were detected between Hedou 12 and the Williams 82 reference sequence. Of these, 243 candidate INDEL markers ranging from 5-50 bp in length were chosen for validation, and 165 (68%) of them revealed polymorphisms between Hedou 12 and Williams 82. The validated INDEL markers were also tested in 12 other soybean cultivars. The number of polymorphisms in the pairwise comparisons of 14 soybean cultivars varied from 27 to 165. To test the utility of these INDEL markers, they were used to perform genetic mapping of a crinkly leaf mutant, and the CRINKLY LEAF locus was successfully mapped to a 360 kb region on chromosome 7. This research shows that high-throughput sequencing technologies can facilitate the development of genome-wide molecular markers for genetic mapping in soybean.
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