Evidence map›Paper›PMID 26483008›Full record

ArticleG3 (Bethesda, Md.)2015

The Founder Strains of the Collaborative Cross Express a Complex Combination of Advantageous and Deleterious Traits for Male Reproduction.

Fanny Odet, Wenqi Pan, Timothy A Bell, Summer G Goodson, Alicia M Stevans, Zianing Yun, David L Aylor, Chia-Yu Kao, Leonard McMillan, Fernando Pardo-Manuel de Villena and 1 more

Erratum issuedAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  9. KRAB zinc finger protein diversification drives mammalian interindividual methylation variability.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Fanny OdetDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Wenqi PanDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Timothy A BellDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina 27599 Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599.
Summer G GoodsonDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Alicia M StevansDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Zianing YunDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
David L AylorDepartment of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695.
Chia-Yu KaoDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Leonard McMillanDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Fernando Pardo-Manuel de VillenaDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina 27599 Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599 dao@med.unc.edu fernando@med.unc.edu.
Deborah A O'BrienDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina 27599 dao@med.unc.edu fernando@med.unc.edu.

Funding

Collaborative Cross: A system genetics approach to the study of male infertilityR01HD065024 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI O'BRIEN, DEBORAH A., PARDO-MANUEL DE VILLENA, FERNANDO · 2010 to 2014
$1.7M
Epigenetics, environmental exposure, and reproduction in the Collaborative CrossK99ES021535 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AYLOR, DAVID LAWRENCE · 2012 to 2013
$176k
System Genetics of Male Infertility in the Collaborative CrossF32GM090667 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AYLOR, DAVID LAWRENCE · 2010 to 2011
$96k
NICHD NIH HHS R01 HD065024NICHD NIH HHS R01HD065024NIEHS NIH HHS K99 ES021535NIGMS NIH HHS F32 GM090667
6 · The paper itself

Abstract

Surveys of inbred strains of mice are standard approaches to determine the heritability and range of phenotypic variation for biomedical traits. In addition, they may lead to the identification of novel phenotypes and models of human disease. Surprisingly, male reproductive phenotypes are among the least-represented traits in the Mouse Phenome Database. Here we report the results of a broad survey of the eight founder inbred strains of both the Collaborative Cross (CC) and the Diversity Outbred populations, two new mouse resources that are being used as platforms for systems genetics and sources of mouse models of human diseases. Our survey includes representatives of the three main subspecies of the house mice and a mix of classical and wild-derived inbred strains. In addition to standard staples of male reproductive phenotyping such as reproductive organ weights, sperm counts, and sperm morphology, our survey includes sperm motility and the first detailed survey of testis histology. As expected for such a broad survey, heritability varies widely among traits. We conclude that although all eight inbred strains are fertile, most display a mix of advantageous and deleterious male reproductive traits. The CAST/EiJ strain is an outlier, with an unusual combination of deleterious male reproductive traits including low sperm counts, high levels of morphologically abnormal sperm, and poor motility. In contrast, sperm from the PWK/PhJ and WSB/EiJ strains had the greatest percentages of normal morphology and vigorous motility. Finally, we report an abnormal testis phenotype that is highly heritable and restricted to the WSB/EiJ strain. This phenotype is characterized by the presence of a large, but variable, number of vacuoles in at least 10% of the seminiferous tubules. The onset of the phenotype between 2 and 3 wk of age is temporally correlated with the formation of the blood-testis barrier. We speculate that this phenotype may play a role in high rates of extinction in the CC project and in the phenotypes associated with speciation in genetic crosses that use the WSB/EiJ strain as representative of the Mus muculus domesticus subspecies.

Indexed as

Crosses, GeneticFounder EffectQuantitative Trait, HeritableQuantitative Trait LociAnimalsFemaleInfertility, MaleLactic AcidMaleMiceMice, Inbred StrainsPhenotypeReproductionSpermatozoaSperm CountSperm MotilityLactic AcidCollaborative Crossmotilityspermvacuole

Identifiers

PMID26483008
PMCPMC4683640

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.