Evidence map›Paper›PMID 26482302›Full record

ArticleAntimicrobial agents and chemotherapy2016

Genomic Characteristics of NDM-Producing Enterobacteriaceae Isolates in Australia and Their blaNDM Genetic Contexts.

Alexander M Wailan, David L Paterson, Karina Kennedy, Paul R Ingram, Evan Bursle, Hanna E Sidjabat

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Predominance ofMedicina (Kaunas, Lithuania) · 2024
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  6. Comparative Genomics of an Emerging Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2024
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  7. Detection of metallo-beta-lactamase-producing genesJournal of water and health · 2024
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  8. Carbapenem resistance inAIMS microbiology · 2023
    Review
  9. Occurrence ofAntibiotics (Basel, Switzerland) · 2022
    Article
  10. NDM-5-ProducingAnimals : an open access journal from MDPI · 2022
    Article
  11. A Natural Novel Mutation in theMicrobiology spectrum · 2022
    Article
  12. Persistence and Dissemination Capacities of aAntibiotics (Basel, Switzerland) · 2022
    Article
  13. Carriage of distinct blaBMC genomics · 2022
    Article
  14. Molecular Epidemiology of New Delhi Metallo-Frontiers in microbiology · 2022
    Article
  15. Emergence of a NDM-1-producing ST25Frontiers in microbiology · 2022
    Article
  16. Article
  17. Article
  18. Carbapenem-ResistantInfection and drug resistance · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alexander M WailanUniversity of Queensland, University of Queensland Centre for Clinical Research, Herston, Queensland, Australia.
David L PatersonUniversity of Queensland, University of Queensland Centre for Clinical Research, Herston, Queensland, Australia Pathology Queensland, Brisbane, Australia.
Karina KennedyCanberra Hospital, Australian National University Medical School, Australian Capital Territory, Australia.
Paul R IngramDepartment of Microbiology and Infectious Diseases, Royal Perth Hospital, Perth, Australia.
Evan BursleUniversity of Queensland, University of Queensland Centre for Clinical Research, Herston, Queensland, Australia Sullivan Nicolaides Pathology, Brisbane, Queensland, Australia.
Hanna E SidjabatUniversity of Queensland, University of Queensland Centre for Clinical Research, Herston, Queensland, Australia h.sidjabat@uq.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

blaNDM has been reported in different Enterobacteriaceae species and on numerous plasmid replicon types (Inc). Plasmid replicon typing, in combination with genomic characteristics of the bacterial host (e.g., sequence typing), is used to infer the spread of antimicrobial resistance determinants between genetically unrelated bacterial hosts. The genetic context of blaNDM is heterogeneous. In this study, we genomically characterized 12 NDM-producing Enterobacteriaceae isolated in Australia between 2012 and 2014: Escherichia coli (n = 6), Klebsiella pneumoniae (n = 3), Enterobacter cloacae (n = 2) and Providencia rettgeri (n = 1). We describe their blaNDM genetic contexts within Tn125, providing insights into the acquisition of blaNDM into Enterobacteriaceae. IncFII-type (n = 7) and IncX3 (n = 4) plasmids were the most common plasmid types found. The IncHI1B (n = 1) plasmid was also identified. Five different blaNDM genetic contexts were identified, indicating four particular plasmids with specific blaNDM genetic contexts (NGCs), three of which were IncFII plasmids (FII-A to -C). Of note, the blaNDM genetic context of P. rettgeri was not conjugative. Epidemiological links between our NDM-producing Enterobacteriaceae were established by their acquisition of these five particular plasmid types. The combination of different molecular and genetic characterization methods allowed us to provide insight into the spread of plasmids transmitting blaNDM.

Indexed as

Genome, BacterialAnti-Bacterial AgentsAustraliabeta-LactamasesConjugation, GeneticDNA Transposable ElementsDrug Resistance, Multiple, BacterialEnterobacter cloacaeEnterobacteriaceae InfectionsEscherichia coliGene ExpressionHumansKlebsiella pneumoniaeMicrobial Sensitivity TestsPlasmidsProvidenciaAnti-Bacterial Agentsbeta-LactamasesDNA Transposable Elements

Identifiers

PMID26482302
PMCPMC4704237

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.