Evidence map›Paper›PMID 26482295›Full record

ArticleScientific reports2015

Substitute sweeteners: diverse bacterial oligosaccharyltransferases with unique N-glycosylation site preferences.

Anne A Ollis, Yi Chai, Aravind Natarajan, Emily Perregaux, Thapakorn Jaroentomeechai, Cassandra Guarino, Jessica Smith, Sheng Zhang, Matthew P DeLisa

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Construction of anFrontiers in bioengineering and biotechnology · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Ribosome Stalling ofACS synthetic biology · 2022
    Article
  12. Article
  13. Article
  14. Interplay of Carbohydrate and Carrier in Antibacterial Glycoconjugate Vaccines.Advances in biochemical engineering/biotechnology · 2021
    Article
  15. Article
  16. Bacterial Glycoengineering as a Biosynthetic Route to Customized Glycomolecules.Advances in biochemical engineering/biotechnology · 2021
    Article
  17. Cell-free systems for accelerating glycoprotein expression and biomanufacturing.Journal of industrial microbiology & biotechnology · 2020
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Anne A OllisSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Yi ChaiSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Aravind NatarajanDepartment of Microbiology, Cornell University, Ithaca, NY 14853 USA.
Emily PerregauxSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Thapakorn JaroentomeechaiSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Cassandra GuarinoSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Jessica SmithSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Sheng ZhangProteomics and Mass Spectrometry Core Facility, Cornell University, Ithaca, New York 14853.
Matthew P DeLisaSchool of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853 USA.
Cornell University · US

Funding

Engineering Escherichia coli for glycosylation of complex human proteinsR44GM088905 · NIGMS · GLYCOBIA, INC. · PI FISHER, ADAM CHARLES · 2011 to 2012
$1.6M
Acquisition of a Hybrid Quadrupole, Ion Mobility Separation, Orthogonal AcceleratS10RR025449 · NCRR · CORNELL UNIVERSITY · PI ZHANG, SHENG · 2009 to 2009
$500k
NCRR NIH HHS 1S10RR025449-01NCRR NIH HHS S10 RR025449NIGMS NIH HHS R44 GM088905NIGMS NIH HHS R44 GM088905-01
6 · The paper itself

Abstract

The central enzyme in the Campylobacter jejuni asparagine-linked glycosylation pathway is the oligosaccharyltransferase (OST), PglB, which transfers preassembled glycans to specific asparagine residues in target proteins. While C. jejuni PglB (CjPglB) can transfer many diverse glycan structures, the acceptor sites that it recognizes are restricted predominantly to those having a negatively charged residue in the -2 position relative to the asparagine. Here, we investigated the acceptor-site preferences for 23 homologs with natural sequence variation compared to CjPglB. Using an ectopic trans-complementation assay for CjPglB function in glycosylation-competent Escherichia coli, we demonstrated in vivo activity for 16 of the candidate OSTs. Interestingly, the OSTs from Campylobacter coli, Campylobacter upsaliensis, Desulfovibrio desulfuricans, Desulfovibrio gigas, and Desulfovibrio vulgaris, exhibited significantly relaxed specificity towards the -2 position compared to CjPglB. These enzymes glycosylated minimal N-X-T motifs in multiple targets and each followed unique, as yet unknown, rules governing acceptor-site preferences. One notable example is D. gigas PglB, which was the only bacterial OST to glycosylate the Fc domain of human immunoglobulin G at its native 'QYNST' sequon. Overall, we find that a subset of bacterial OSTs follow their own rules for acceptor-site specificity, thereby expanding the glycoengineering toolbox with previously unavailable biocatalytic diversity.

Indexed as

Amino Acid MotifsBacterial ProteinsComputational BiologyData MiningGenome, BacterialGenomicsGlycoproteinsGlycosylationHexosyltransferasesHumansImmunoglobulin Fc FragmentsMembrane ProteinsModels, MolecularMolecular ConformationPhylogenyPolysaccharidesBacterial Proteinsdolichyl-diphosphooligosaccharide - protein glycotransferaseGlycoproteinsHexosyltransferasesImmunoglobulin Fc FragmentsMembrane ProteinsPolysaccharidesPolysaccharides, BacterialSweetening Agents

Identifiers

PMID26482295
PMCPMC4894442
OpenAlexW1754512095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.