Evidence map›Paper›PMID 26481684›Full record

ArticleThe Journal of experimental medicine2015

Oct1 and OCA-B are selectively required for CD4 memory T cell function.

Arvind Shakya, Alon Goren, Alex Shalek, Cody N German, Jeremy Snook, Vijay K Kuchroo, Nir Yosef, Raymond C Chan, Aviv Regev, Matthew A Williams and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. How experimental models have unlocked hidden mechanisms of hypersensitivity pneumonitis.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. OCA-B/Pou2af1 is sufficient to promote CD4Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. The Role of the Transcriptional Coactivator BOB.1/OBF.1 in Adaptive Immunity.Advances in experimental medicine and biology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. ABCB10 Loss Reduces CD4Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Role of Epigenetics in the Regulation of Immune Functions of the Skin.The Journal of investigative dermatology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Arvind ShakyaDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84112.
Alon GorenBroad Technology Labs, The Broad Institute of MIT and Harvard, Cambridge, MA 02142.
Alex ShalekDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138 Department of Physics, Harvard University, Cambridge, MA 02138 The Broad Institute of MIT and Harvard, Cambridge, MA 02142​
Cody N GermanDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84112.
Jeremy SnookDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84112.
Vijay K KuchrooAnn Romney Center for Neurologic Diseases, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 The Broad Institute of MIT and Harvard, Cambridge, MA 02142​
Nir YosefAnn Romney Center for Neurologic Diseases, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115 The Broad Institute of MIT and Harvard, Cambridge, MA 02142​
Raymond C ChanDepartment of Human Genetics, University of Michigan, Ann Arbor, MI 48109.
Aviv RegevHoward Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139 The Broad Institute of MIT and Harvard, Cambridge, MA 02142​
Matthew A WilliamsDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84112 dean.tantin@path.utah.edu matthew.williams@path.utah.edu.
Dean TantinDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84112 dean.tantin@path.utah.edu matthew.williams@path.utah.edu.
University of Utah · USBroad Institute · USHarvard University · USHoward Hughes Medical Institute · USUniversity of Michigan–Ann Arbor · US

Funding

Role of Transcription Coactivator OCA-B in Gene Poising and Immunological MemoryR01AI100873 · NIAID · UNIVERSITY OF UTAH · PI TANTIN, DEAN · 2013 to 2022
$3.8M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI100873NIAID NIH HHS R01AI100873
6 · The paper itself

Abstract

Epigenetic changes are crucial for the generation of immunological memory. Failure to generate or maintain these changes will result in poor memory responses. Similarly, augmenting or stabilizing the correct epigenetic states offers a potential method of enhancing memory. Yet the transcription factors that regulate these processes are poorly defined. We find that the transcription factor Oct1 and its cofactor OCA-B are selectively required for the in vivo generation of CD4(+) memory T cells. More importantly, the memory cells that are formed do not respond properly to antigen reencounter. In vitro, both proteins are required to maintain a poised state at the Il2 target locus in resting but previously stimulated CD4(+) T cells. OCA-B is also required for the robust reexpression of multiple other genes including Ifng. ChIPseq identifies ∼50 differentially expressed direct Oct1 and OCA-B targets. We identify an underlying mechanism involving OCA-B recruitment of the histone lysine demethylase Jmjd1a to targets such as Il2, Ifng, and Zbtb32. The findings pinpoint Oct1 and OCA-B as central mediators of CD4(+) T cell memory.

Indexed as

AnimalsBlotting, WesternCD4-Positive T-LymphocytesCells, CulturedGene ExpressionHost-Pathogen InteractionsImmunologic MemoryInterferon-gammaInterleukin-2Jumonji Domain-Containing Histone DemethylasesLymphocytic ChoriomeningitisLymphocytic choriomeningitis virusMice, Inbred C57BLMice, KnockoutOctamer Transcription Factor-1Protein BindingInterferon-gammaInterleukin-2Jumonji Domain-Containing Histone DemethylasesKdm3a protein, mouseOctamer Transcription Factor-1Pou2af1 protein, mouseRepressor ProteinsRog protein, mouseTrans-Activators

Identifiers

PMID26481684
PMCPMC4647264
OpenAlexW1766991754

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.