Evidence map›Paper›PMID 26481444›Full record

ArticleMolecular microbiology2016

The N-acetylglucosamine catabolic gene cluster in Trichoderma reesei is controlled by the Ndt80-like transcription factor RON1.

Lisa Kappel, Romana Gaderer, Michel Flipphi, Verena Seidl-Seiboth

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Membrane and organelle rearrangement during ascospore formation in budding yeast.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  9. A Special Phenotype of AconidialJournal of fungi (Basel, Switzerland) · 2022
    Article
  10. Review
  11. Article
  12. N-Acetylglucosamine (GlcNAc) Sensing, Utilization, and Functions inJournal of fungi (Basel, Switzerland) · 2020
    Review
  13. International journal of molecular sciences · 2020
    Article
  14. Article
  15. Genomic clustering within functionally related gene families inComputational and structural biotechnology journal · 2020
    Review
  16. Journal of fungi (Basel, Switzerland) · 2019
    Review
  17. Article
  18. Genetic Analysis ofmSphere · 2018
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Lisa KappelResearch Division Biotechnology and Microbiology, Institute of Chemical Engineering, TU Wien, Vienna, Austria.
Romana GadererResearch Division Biotechnology and Microbiology, Institute of Chemical Engineering, TU Wien, Vienna, Austria.
Michel FlipphiDepartment of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.
Verena Seidl-SeibothResearch Division Biotechnology and Microbiology, Institute of Chemical Engineering, TU Wien, Vienna, Austria.
TU Wien · ATUniversity of Debrecen · HU

Funding

Austrian Science Fund FWF P 26028
6 · The paper itself

Abstract

Chitin is an important structural constituent of fungal cell walls composed of N-acetylglucosamine (GlcNAc) monosaccharides, but catabolism of GlcNAc has not been studied in filamentous fungi so far. In the yeast Candida albicans, the genes encoding the three enzymes responsible for stepwise conversion of GlcNAc to fructose-6-phosphate are clustered. In this work, we analysed GlcNAc catabolism in ascomycete filamentous fungi and found that the respective genes are also clustered in these fungi. In contrast to C. albicans, the cluster often contains a gene for an Ndt80-like transcription factor, which we named RON1 (regulator of N-acetylglucosamine catabolism 1). Further, a gene for a glycoside hydrolase 3 protein related to bacterial N-acetylglucosaminidases can be found in the GlcNAc gene cluster in filamentous fungi. Functional analysis in Trichoderma reesei showed that the transcription factor RON1 is a key activator of the GlcNAc gene cluster and essential for GlcNAc catabolism. Furthermore, we present an evolutionary analysis of Ndt80-like proteins in Ascomycota. All GlcNAc cluster genes, as well as the GlcNAc transporter gene ngt1, and an additional transcriptional regulator gene, csp2, encoding the homolog of Neurospora crassa CSP2/GRHL, were functionally characterised by gene expression analysis and phenotypic characterisation of knockout strains in T. reesei.

Indexed as

Gene Expression Regulation, FungalMultigene FamilyAcetylglucosamineAscomycotaCandida albicansChitinFungal ProteinsGenes, FungalNeurospora crassaTranscription FactorsTrichodermaUp-RegulationAcetylglucosamineChitinFungal ProteinsTranscription Factors

Identifiers

PMID26481444
PMCPMC4950302
OpenAlexW2154566732

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.