Evidence map›Paper›PMID 26481354›Full record

ArticleNucleic acids research2016

Synthesis and cell-free cloning of DNA libraries using programmable microfluidics.

Tuval Ben Yehezkel, Arnaud Rival, Ofir Raz, Rafael Cohen, Zipora Marx, Miguel Camara, Jean-Frédéric Dubern, Birgit Koch, Stephan Heeb, Natalio Krasnogor and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Improving Reproducibility in Synthetic Biology.Frontiers in bioengineering and biotechnology · 2019
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Tuval Ben YehezkelApplied Mathematics and Computer Science and Biological Chemistry, Weizmann institute of science, Rehovot, Israel.
Arnaud RivalIllumina Inc., Grenoble, France.
Ofir RazApplied Mathematics and Computer Science and Biological Chemistry, Weizmann institute of science, Rehovot, Israel.
Rafael CohenApplied Mathematics and Computer Science and Biological Chemistry, Weizmann institute of science, Rehovot, Israel.
Zipora MarxApplied Mathematics and Computer Science and Biological Chemistry, Weizmann institute of science, Rehovot, Israel.
Miguel CamaraCentre for Bio-molecular Sciences, University of Nottingham, Nottingham, UK.
Jean-Frédéric DubernCentre for Bio-molecular Sciences, University of Nottingham, Nottingham, UK.
Birgit KochSchool of Computing Science, Claremont Tower, Newcastle University, Newcastle, UK.
Stephan HeebCentre for Bio-molecular Sciences, University of Nottingham, Nottingham, UK.
Natalio KrasnogorSchool of Computing Science, Claremont Tower, Newcastle University, Newcastle, UK.
Cyril DelattreIllumina Inc., Grenoble, France.
Ehud ShapiroApplied Mathematics and Computer Science and Biological Chemistry, Weizmann institute of science, Rehovot, Israel Ehud.Shapiro@Weizmann.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microfluidics may revolutionize our ability to write synthetic DNA by addressing several fundamental limitations associated with generating novel genetic constructs. Here we report the first de novo synthesis and cell-free cloning of custom DNA libraries in sub-microliter reaction droplets using programmable digital microfluidics. Specifically, we developed Programmable Order Polymerization (POP), Microfluidic Combinatorial Assembly of DNA (M-CAD) and Microfluidic In-vitro Cloning (MIC) and applied them to de novo synthesis, combinatorial assembly and cell-free cloning of genes, respectively. Proof-of-concept for these methods was demonstrated by programming an autonomous microfluidic system to construct and clone libraries of yeast ribosome binding sites and bacterial Azurine, which were then retrieved in individual droplets and validated. The ability to rapidly and robustly generate designer DNA molecules in an autonomous manner should have wide application in biological research and development.

Indexed as

Gene LibraryCell-Free SystemCloning, MolecularDNAMicrofluidicsDNA

Identifiers

PMID26481354
PMCPMC4770201

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.