Evidence map›Paper›PMID 26479439›Full record

ArticleNature chemical biology2015

Mapping the energy landscape for second-stage folding of a single membrane protein.

Duyoung Min, Robert E Jefferson, James U Bowie, Tae-Young Yoon

Abstract read
In one paragraph

Article in Nature chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 90 citations in OpenAlex.

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  13. Folding speeds of helical membrane proteins.Biochemical Society transactions · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Duyoung MinNational Creative Research Initiative Center for Single-Molecule Systems Biology, KAIST, Daejeon, South Korea.
Robert E JeffersonDepartment of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, USA.
James U BowieDepartment of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, California, USA.
Tae-Young YoonNational Creative Research Initiative Center for Single-Molecule Systems Biology, KAIST, Daejeon, South Korea.
Korea Advanced Institute of Science and Technology · KRUniversity of California, Los Angeles · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Membrane Protein StabilityR01GM063919 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOWIE, JAMES U · 2001 to 2021
$5.6M
NIGMS NIH HHS 2R01GM063919NIGMS NIH HHS R01 GM063919NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

Membrane proteins are designed to fold and function in a lipid membrane, yet folding experiments within a native membrane environment are challenging to design. Here we show that single-molecule forced unfolding experiments can be adapted to study helical membrane protein folding under native-like bicelle conditions. Applying force using magnetic tweezers, we find that a transmembrane helix protein, Escherichia coli rhomboid protease GlpG, unfolds in a highly cooperative manner, largely unraveling as one physical unit in response to mechanical tension above 25 pN. Considerable hysteresis is observed, with refolding occurring only at forces below 5 pN. Characterizing the energy landscape reveals only modest thermodynamic stability (ΔG = 6.5 kBT) but a large unfolding barrier (21.3 kBT) that can maintain the protein in a folded state for long periods of time (t1/2 ∼3.5 h). The observed energy landscape may have evolved to limit the existence of troublesome partially unfolded states and impart rigidity to the structure.

Indexed as

ThermodynamicsEscherichia coli ProteinsKineticsMembrane ProteinsModels, MolecularProtein ConformationProtein FoldingEscherichia coli ProteinsMembrane Proteins

Identifiers

PMID26479439
PMCPMC4986997
OpenAlexW1788228976

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.