ArticleScientific reports2015
Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.).
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 2 of them syntheses that pooled it.
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Who cites it
85 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Pooled it
- Exploring Chickpea Germplasm Diversity for Broadening the Genetic Base Utilizing Genomic Resourses.Frontiers in genetics · 2022Pooled it
- Multi-model genome-wide association analysis of agronomic traits in a Kabuli chickpea MAGIC-subset population (Frontiers in plant science · 2026Article
- Integrating multi-omics approaches to shape legume root system architecture under drought stress: a comprehensive review.Frontiers in plant science · 2026Review
- GWAS for QTLs associated with agronomic traits in Chickpea (Cicer arietinum L.) harvested in South-East Kazakhstan.BMC plant biology · 2025Article
- An Australian chickpea pan-genome provides insights into genome organization and offers opportunities for enhancing drought adaptation for crop improvement.Plant biotechnology journal · 2025Article
- A chickpea MAGIC population to dissect the genetics of complex traits.The plant genome · 2025Article
- An introgression from Triticum timopheevii reduces grain protein content in winter wheat populations.The plant genome · 2025Article
- Genetic architecture of key traits forHorticulture research · 2025Article
- Advancing Chickpea Breeding: Omics Insights for Targeted Abiotic Stress Mitigation and Genetic Enhancement.Biochemical genetics · 2025Review
- Identification and validation of a major QTL, QFhb-6AL, for Fusarium head blight resistance on chromosome 6AL in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- An overview of heat stress in Chickpea (Molecular breeding : new strategies in plant improvement · 2025Review
- Genome-wide association studies of egg production traits by whole genome sequencing of Laiwu Black chicken.Poultry science · 2024Article
- Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society.Plant biotechnology journal · 2024Article
- Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.).The plant genome · 2024Article
- Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea.The plant genome · 2024Article
- Genetic mapping of quantitative trait loci associated with drought tolerance in chickpea (Cicer arietinum L.).Scientific reports · 2023Article
- Comprehensive genomic analyses of Vigna unguiculata provide insights into population differentiation and the genetic basis of key agricultural traits.Plant biotechnology journal · 2023Article
- Developing drought-smart, ready-to-grow future crops.The plant genome · 2023Review
- Comprehensive Transcriptome Profiling Uncovers Molecular Mechanisms and Potential Candidate Genes Associated with Heat Stress Response in Chickpea.International journal of molecular sciences · 2023Article
25 more citing papers are in PubMed but not listed here.
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Authors and funding
18 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A combination of two approaches, namely QTL analysis and gene enrichment analysis were used to identify candidate genes in the "QTL-hotspot" region for drought tolerance present on the Ca4 pseudomolecule in chickpea. In the first approach, a high-density bin map was developed using 53,223 single nucleotide polymorphisms (SNPs) identified in the recombinant inbred line (RIL) population of ICC 4958 (drought tolerant) and ICC 1882 (drought sensitive) cross. QTL analysis using recombination bins as markers along with the phenotyping data for 17 drought tolerance related traits obtained over 1-5 seasons and 1-5 locations split the "QTL-hotspot" region into two subregions namely "QTL-hotspot_a" (15 genes) and "QTL-hotspot_b" (11 genes). In the second approach, gene enrichment analysis using significant marker trait associations based on SNPs from the Ca4 pseudomolecule with the above mentioned phenotyping data, and the candidate genes from the refined "QTL-hotspot" region showed enrichment for 23 genes. Twelve genes were found common in both approaches. Functional validation using quantitative real-time PCR (qRT-PCR) indicated four promising candidate genes having functional implications on the effect of "QTL-hotspot" for drought tolerance in chickpea.
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