Evidence map›Paper›PMID 26478504›Full record

ArticleBiochemistry2015

Heme Binding by Corynebacterium diphtheriae HmuT: Function and Heme Environment.

Elizabeth B Draganova, Neval Akbas, Seth A Adrian, Gudrun S Lukat-Rodgers, Daniel P Collins, John H Dawson, Courtni E Allen, Michael P Schmitt, Kenton R Rodgers, Dabney W Dixon

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. The Exoproteome and Surfaceome of ToxigenicJournal of proteome research · 2025
    Article
  3. Article
  4. Pirates of the haemoglobin.Microbial cell (Graz, Austria) · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Active Sites of OBiochemistry · 2017
    Article
  9. Article
  10. Corynebacterium diphtheriae HmuT: dissecting the roles of conserved residues in heme pocket stabilization.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  11. Heme Synthesis and Acquisition in Bacterial Pathogens.Journal of molecular biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Elizabeth B DraganovaDepartment of Chemistry, Georgia State University , Atlanta, Georgia 30302-3965, United States.
Neval AkbasDepartment of Chemistry, Georgia State University , Atlanta, Georgia 30302-3965, United States.
Seth A AdrianDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Gudrun S Lukat-RodgersDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Daniel P CollinsDepartment of Chemistry and Biochemistry, University of South Carolina , Columbia, South Carolina 29208, United States.
John H DawsonDepartment of Chemistry and Biochemistry, University of South Carolina , Columbia, South Carolina 29208, United States.
Courtni E AllenLaboratory of Respiratory and Special Pathogens, Division of Bacterial, Parasitic, and Allergenic Products, Center for Biologics Evaluation, and Research, Food and Drug Administration , Silver Spring, Maryland 20993, United States.
Michael P SchmittLaboratory of Respiratory and Special Pathogens, Division of Bacterial, Parasitic, and Allergenic Products, Center for Biologics Evaluation, and Research, Food and Drug Administration , Silver Spring, Maryland 20993, United States.
Kenton R RodgersDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Dabney W DixonDepartment of Chemistry, Georgia State University , Atlanta, Georgia 30302-3965, United States.

Funding

SPECTROSCOPY AND MECHANISMS OF HEME-IRON OXYGENASESR01GM026730 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DAWSON, JOHN H · 1985 to 2009
$2.1M
Study of heme uptake and transport proteins from P. aerugenosa and S. dysenteriaeR15AI072719 · NIAID · NORTH DAKOTA STATE UNIVERSITY · PI RODGERS, KENTON · 2007 to 2011
$707k
Determining the structural basis for the mechanism of catalytic O2 evolution by tR15GM094039 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI LUKAT-RODGERS, GUDRUN SUSANNE · 2010 to 2010
$431k
NIAID NIH HHS AI072719NIAID NIH HHS R15 AI072719NIGMS NIH HHS GM094039NIGMS NIH HHS GM26730NIGMS NIH HHS R01 GM026730NIGMS NIH HHS R15 GM094039
6 · The paper itself

Abstract

The heme uptake pathway (hmu) of Corynebacterium diphtheriae utilizes multiple proteins to bind and transport heme into the cell. One of these proteins, HmuT, delivers heme to the ABC transporter HmuUV. In this study, the axial ligation of the heme in ferric HmuT is probed by examination of wild-type (WT) HmuT and a series of conserved heme pocket residue mutants, H136A, Y235A, and M292A. Characterization by UV-visible, resonance Raman, and magnetic circular dichroism spectroscopies indicates that H136 and Y235 are the axial ligands in ferric HmuT. Consistent with this assignment of axial ligands, ferric WT and H136A HmuT are difficult to reduce while Y235A is reduced readily in the presence of dithionite. The FeCO Raman shifts in WT, H136A, and Y235A HmuT-CO complexes provide further evidence of the axial ligand assignments. Additionally, these frequencies provide insight into the nonbonding environment of the heme pocket. Ferrous Y235A and the Y235A-CO complex reveal that the imidazole of H136 exists in two forms, one neutral and one with imidazolate character, consistent with a hydrogen bond acceptor on the H136 side of the heme. The ferric fluoride complex of Y235A reveals the presence of at least one hydrogen bond donor on the Y235 side of the heme. Hemoglobin utilization assays showed that the axial Y235 ligand is required for heme uptake in HmuT.

Indexed as

Amino Acid SubstitutionBacterial ProteinsBinding SitesConserved SequenceCorynebacterium diphtheriaeHemeHistidineLigandsLipoproteinsModels, MolecularMutagenesis, Site-DirectedProtein BindingProtein ConformationRecombinant ProteinsSpectrophotometryTyrosineBacterial ProteinsHemeHistidineHmuT protein, Corynebacterium diphtheriaeLigandsLipoproteinsRecombinant ProteinsTyrosine

Identifiers

PMID26478504
PMCPMC4943319

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.