Evidence map›Paper›PMID 26477733›Full record

ArticleScientific reports2015

A transcriptional reference map of defence hormone responses in potato.

Lea Wiesel, Jayne L Davis, Linda Milne, Vanesa Redondo Fernandez, Miriam B Herold, Jill Middlefell Williams, Jenny Morris, Pete E Hedley, Brian Harrower, Adrian C Newton and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  3. International journal of molecular sciences · 2025
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  9. Comparison of the Distinct, Host-Specific Response of ThreeInternational journal of molecular sciences · 2021
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  10. Article
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  12. Volatile Compounds FromFrontiers in microbiology · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Gene Profiling in Late Blight Resistance in Potato Genotype SD20.International journal of molecular sciences · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Lea WieselThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Jayne L DavisThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Linda MilneThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Vanesa Redondo FernandezThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Miriam B HeroldThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Jill Middlefell WilliamsThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Jenny MorrisThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Pete E HedleyThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Brian HarrowerThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Adrian C NewtonThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Paul R J BirchThe Division of Plant Sciences, College of Life Science, University of Dundee at the James Hutton Institute, Dundee, UK.
Eleanor M GilroyThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Ingo HeinThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
James Hutton Institute · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H018697/1Biotechnology and Biological Sciences Research Council BB/K018299/1Biotechnology and Biological Sciences Research Council BB/L008025/1
6 · The paper itself

Abstract

Phytohormones are involved in diverse aspects of plant life including the regulation of plant growth, development and reproduction, as well as governing biotic and abiotic stress responses. We have generated a comprehensive transcriptional reference map of the early potato responses to exogenous application of the defence hormones abscisic acid, brassinolides (applied as epibrassinolide), ethylene (applied as the ethylene precursor aminocyclopropanecarboxylic acid), salicylic acid and jasmonic acid (applied as methyl jasmonate). Of the 39000 predicted genes on the microarray, a total of 2677 and 2473 genes were significantly differentially expressed at 1 h and 6 h after hormone treatment, respectively. Specific marker genes newly identified for the early hormone responses in potato include: a homeodomain 20 transcription factor (DMG400000248) for abscisic acid; a SAUR gene (DMG400016561) induced in epibrassinolide treated plants; an osmotin gene (DMG400003057) specifically enhanced by aminocyclopropanecarboxylic acid; a gene weakly similar to AtWRKY40 (DMG402007388) that was induced by salicylic acid; and a jasmonate ZIM-domain protein 1 (DMG400002930) which was specifically activated by methyl jasmonate. An online database has been set up to query the expression patterns of potato genes represented on the microarray that can also incorporate future microarray or RNAseq-based expression studies.

Indexed as

Gene Expression ProfilingTranscriptomeComputational BiologyDatabases, Nucleic AcidGene Expression Regulation, PlantMolecular Sequence AnnotationPlant Growth RegulatorsReproducibility of ResultsSolanum tuberosumPlant Growth Regulators

Identifiers

PMID26477733
PMCPMC4610000
OpenAlexW2414639880

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.