Evidence map›Paper›PMID 26477563›Full record

ArticleNature communications2015

An Xist-activating antisense RNA required for X-chromosome inactivation.

Mrinal K Sarkar, Srimonta Gayen, Surinder Kumar, Emily Maclary, Emily Buttigieg, Michael Hinten, Archana Kumari, Clair Harris, Takashi Sado, Sundeep Kalantry

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

  1. Genome research · 2025
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. The Molecular and Nuclear Dynamics of X-Chromosome Inactivation.Cold Spring Harbor perspectives in biology · 2022
    Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Experimental Analysis of Imprinted Mouse X-Chromosome Inactivation.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  19. What makes the maternal X chromosome resistant to undergoing imprinted X inactivation?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Mrinal K SarkarDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Srimonta GayenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Surinder KumarDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Emily MaclaryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Emily ButtigiegDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Michael HintenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Archana KumariDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Clair HarrisDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Takashi SadoDepartment of Advanced Bioscience, Graduate School of Agriculture, Kinki University, 3327-204 Nakamachi, Nara 631-8505, Japan.ORCID http://orcid.org/0000-0002-1232-0250
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.ORCID http://orcid.org/0000-0003-0763-8050
University of Michigan · USKindai University · JP

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Initiation of Epigenetic Transcriptional RegulationDP2OD008646 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2011 to 2011
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Mechanistic Analysis of Parent-of-Origin-Specific Gene Expression in the PlacentaF31HD080280 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MACLARY, EMILY TOMPKINS · 2014 to 2015
$67k
NICHD NIH HHS 1F31HD080280-01NICHD NIH HHS F31 HD080280NICHD NIH HHS T32 HD079342NIGMS NIH HHS 5-T32-GM07544NIGMS NIH HHS T32 GM007544NIH HHS DP2 OD008646NIH HHS DP2-OD-008646-01
6 · The paper itself

Abstract

The transcriptional imbalance due to the difference in the number of X chromosomes between male and female mammals is remedied through X-chromosome inactivation, the epigenetic transcriptional silencing of one of the two X chromosomes in females. The X-linked Xist long non-coding RNA functions as an X inactivation master regulator; Xist is selectively upregulated from the prospective inactive X chromosome and is required in cis for X inactivation. Here we discover an Xist antisense long non-coding RNA, XistAR (Xist Activating RNA), which is encoded within exon 1 of the mouse Xist gene and is transcribed only from the inactive X chromosome. Selective truncation of XistAR, while sparing the overlapping Xist RNA, leads to a deficiency in Xist RNA expression in cis during the initiation of X inactivation. Thus, the Xist gene carries within its coding sequence an antisense RNA that drives Xist expression.

Indexed as

RNA, Long NoncodingX Chromosome InactivationAnimalsCell LineChromosome MappingFemaleIn Situ Hybridization, FluorescenceMaleMice, Inbred C57BLRNA, AntisenseRNA, AntisenseRNA, Long NoncodingXIST non-coding RNA

Identifiers

PMID26477563
PMCPMC4616153
OpenAlexW1782317462

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.