Evidence map›Paper›PMID 26477495›Full record

ArticleScientific reports2015

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases.

Jialiang Yang, Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann, Yong Zhao, Charles V Mobbs, Eric E Schadt, Jun Zhu and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 127 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 2 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 2 syntheses or guidelines pooled it, 222 citations in OpenAlex.

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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 20 institutions in 9 countries.

Jialiang YangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Tao HuangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Francesca PetraliaInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Quan LongInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Bin ZhangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Carmen ArgmannInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Yong ZhaoInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Charles V MobbsDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Eric E SchadtInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Jun ZhuInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Zhidong TuInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
GTEx Consortium
Icahn School of Medicine at Mount Sinai · USHarvard University · USLeidos (United States) · USLeidos Biomedical Research Inc. (United States)National Cancer Institute · USUniversity of Miami · USBroad Institute · USRoswell Park Comprehensive Cancer Center · USUniversity of Chicago · USVirginia Commonwealth University · USNational Institutes of Health · USStanford University · USCentre for Genomic Regulation · ESNational Human Genome Research Institute · USPhoenix (United States) · USUniversity at Buffalo, State University of New York · USVan Andel Institute · USMassachusetts Institute of Technology · USNational Institute of Mental Health · CZNorth Carolina State University · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
Pilot and Feasibility ProgramP30DK020595 · NIDDK · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2013 to 2026
$20.9M
LIMBIC &MEDULLARY MECH. IN COCAINE-RELATED SUDDEN DEATHR01DA006227 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MASH, DEBORAH C. · 1990 to 2012
$3.7M
Epigenetic Marks of Cocaine AddictionR01DA033684 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MASH, DEBORAH C., TURECKI, GUSTAVO · 2011 to 2015
$3.6M
Epigenomic variation atlas across human tissues and individuals in GTExU01HG007610 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KELLIS, MANOLIS · 2014 to 2016
$3.0M
Methods for high-resolution analysis of genetic effects on gene expressionR01MH101814 · NIMH · UNIVERSITY OF GENEVA · PI BUSTAMANTE, CARLOS DANIEL, DERMITZAKIS, EMMANOUIL · 2013 to 2016
$2.3M
Harnessing GTEx to Create Transcriptome Knowledge and Inform Disease BiologyR01MH101820 · NIMH · UNIVERSITY OF CHICAGO · PI COX, NANCY J, NICOLAE, DAN LIVIU · 2013 to 2015
$2.3M
Identification and validation of cell specific eQTLs by Bayesian modelingR01MH101822 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BROWN, CHRISTOPHER DAVID, ENGELHARDT, BARBARA · 2013 to 2016
$1.9M
Genetic Regulation of Gene Expression and its Impact on Phenotypes - SupplementR01MH101782 · NIMH · STANFORD UNIVERSITY · PI SABATTI, CHIARA · 2013 to 2016
$1.3M
MODELING THE EFFECTS OF STRUCTURAL VARIATION IN GTEX DATA AND MENDELIAN DISEASER01MH101810 · NIMH · WASHINGTON UNIVERSITY · PI CONRAD, DONALD F. · 2013 to 2016
$1.3M
Systems approaches to link tissue-specific expression to diseaseR01MH101819 · NIMH · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI NOBEL, ANDREW B, WRIGHT, FRED A. · 2013 to 2015
$1.3M
Statistical analysis of gene expression quantitative trait loci (eQTL)R01MH101825 · NIMH · UNIVERSITY OF CHICAGO · PI STEPHENS, MATTHEW · 2013 to 2015
$1.1M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS P30 CA016056NHGRI NIH HHS U01 HG007610NHLBI NIH HHS HHSN268201000029CNIDA NIH HHS DA006227NIDA NIH HHS DA033684NIDA NIH HHS R01 DA006227NIDA NIH HHS R01 DA033684NIDDK NIH HHS P30 DK020595NIMH NIH HHS MH090936NIMH NIH HHS MH090937NIMH NIH HHS MH090941NIMH NIH HHS MH090948NIMH NIH HHS MH090951NIMH NIH HHS MH101782NIMH NIH HHS MH101810NIMH NIH HHS MH101814NIMH NIH HHS MH101819NIMH NIH HHS MH101820NIMH NIH HHS MH101822NIMH NIH HHS MH101825NIMH NIH HHS N01MH000028NIMH NIH HHS R01 MH090936NIMH NIH HHS R01 MH090937NIMH NIH HHS R01 MH090941NIMH NIH HHS R01 MH090948NIMH NIH HHS R01 MH090951NIMH NIH HHS R01 MH101782NIMH NIH HHS R01 MH101810NIMH NIH HHS R01 MH101814NIMH NIH HHS R01 MH101819NIMH NIH HHS R01 MH101820NIMH NIH HHS R01 MH101822NIMH NIH HHS R01 MH101825
6 · The paper itself

Abstract

Aging is one of the most important biological processes and is a known risk factor for many age-related diseases in human. Studying age-related transcriptomic changes in tissues across the whole body can provide valuable information for a holistic understanding of this fundamental process. In this work, we catalogue age-related gene expression changes in nine tissues from nearly two hundred individuals collected by the Genotype-Tissue Expression (GTEx) project. In general, we find the aging gene expression signatures are very tissue specific. However, enrichment for some well-known aging components such as mitochondria biology is observed in many tissues. Different levels of cross-tissue synchronization of age-related gene expression changes are observed, and some essential tissues (e.g., heart and lung) show much stronger "co-aging" than other tissues based on a principal component analysis. The aging gene signatures and complex disease genes show a complex overlapping pattern and only in some cases, we see that they are significantly overlapped in the tissues affected by the corresponding diseases. In summary, our analyses provide novel insights to the co-regulation of age-related gene expression in multiple tissues; it also presents a tissue-specific view of the link between aging and age-related diseases.

Indexed as

Gene ExpressionGene Expression RegulationGenetic Association StudiesAdultAgedAgingAnimalsCluster AnalysisComputational BiologyFemaleGene Expression ProfilingHumansMaleMiceMiddle AgedMolecular Sequence Annotation

Identifiers

PMID26477495
PMCPMC4609956
OpenAlexW2164802216

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.