Evidence map›Paper›PMID 26476458›Full record

ArticleNucleic acids research2016

GlyTouCan 1.0--The international glycan structure repository.

Kiyoko Aoki-Kinoshita, Sanjay Agravat, Nobuyuki P Aoki, Sena Arpinar, Richard D Cummings, Akihiro Fujita, Noriaki Fujita, Gerald M Hart, Stuart M Haslam, Toshisuke Kawasaki and 14 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Introduction of a human- and keyboard-friendly N-glycan nomenclature.Beilstein journal of organic chemistry · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Informatics Ecosystems to Advance the Biology of Glycans.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  13. Article
  14. The glycosylation in SARS-CoV-2 and its receptor ACE2.Signal transduction and targeted therapy · 2021
    Review
  15. Putting the pieces together: mapping the O-glycoproteome.Current opinion in biotechnology · 2021
    Review
  16. Article
  17. Review
  18. Article
  19. Glycosylation and Cardiovascular Diseases.Advances in experimental medicine and biology · 2021
    Article
  20. Bioinformatics in Immunoglobulin Glycosylation Analysis.Experientia supplementum (2012) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Kiyoko Aoki-KinoshitaFaculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan Glycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan kkiyoko@soka.ac.jp.
Sanjay AgravatDepartment of Mathematics and Computer Science, Emory University, Atlanta, GA, 30322, USA.
Nobuyuki P AokiFaculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan.ORCID http://orcid.org/0000-0002-5928-5931
Sena ArpinarComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
Richard D CummingsDepartment of Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02115,USA.
Akihiro FujitaFaculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan.
Noriaki FujitaGlycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan.
Gerald M HartDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
Stuart M HaslamDepartment of Life Sciences, Faculty of National Sciences, Imperial College London, London, SW7 2AZ, UK.
Toshisuke KawasakiResearch Center for Glycobiotechnology, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.
Masaaki MatsubaraThe Noguchi Institute, Tokyo 173-0003, Japan.
Kelley W MoremanComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
Shujiro OkudaNiigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Michael PierceComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
René RanzingerComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
Toshihide ShikanaiGlycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan.
Daisuke ShinmachiFaculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan.
Elena SolovievaGlycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan.
Yoshinori SuzukiGlycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan.
Shinichiro TsuchiyaFaculty of Science and Engineering, Soka University, Tokyo 192-8577, Japan.
Issaku YamadaThe Noguchi Institute, Tokyo 173-0003, Japan.
William S YorkComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
Joseph ZaiaCenter for Biomedical Mass Spectrometry, Dept. of Biochemistry, Boston University School of Medicine, Boston, MA, 02118, USA.
Hisashi NarimatsuGlycoscience and Glycotechnology Research Group, AIST, Ibaraki 305-8568, Japan.

Funding

TR&D1: Stem Cell and Induced Pluripotent Stem Cell Resources (Pages 116-134)P41GM103490 · NIGMS · UNIVERSITY OF GEORGIA · PI PIERCE, J. MICHAEL · 2012 to 2018
$13.7M
Overall Priority Score P41GM103694 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D · 2013 to 2018
$6.9M
Biotechnology and Biological Sciences Research Council BB/F008309/1Biotechnology and Biological Sciences Research Council BBF0083091Biotechnology and Biological Sciences Research Council BB/K016164/1NIGMS NIH HHS 8P41GM103490NIGMS NIH HHS P41 GM103490NIGMS NIH HHS P41 GM103694
6 · The paper itself

Abstract

Glycans are known as the third major class of biopolymers, next to DNA and proteins. They cover the surfaces of many cells, serving as the 'face' of cells, whereby other biomolecules and viruses interact. The structure of glycans, however, differs greatly from DNA and proteins in that they are branched, as opposed to linear sequences of amino acids or nucleotides. Therefore, the storage of glycan information in databases, let alone their curation, has been a difficult problem. This has caused many duplicated efforts when integration is attempted between different databases, making an international repository for glycan structures, where unique accession numbers are assigned to every identified glycan structure, necessary. As such, an international team of developers and glycobiologists have collaborated to develop this repository, called GlyTouCan and is available at http://glytoucan.org/, to provide a centralized resource for depositing glycan structures, compositions and topologies, and to retrieve accession numbers for each of these registered entries. This will thus enable researchers to reference glycan structures simply by accession number, as opposed to by chemical structure, which has been a burden to integrate glycomics databases in the past.

Indexed as

Databases, ChemicalMolecular StructurePolysaccharidesPolysaccharides

Identifiers

PMID26476458
PMCPMC4702779

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.