Evidence map›Paper›PMID 26475319›Full record

ArticleGenome biology and evolution2015

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi.

Matteo Chiara, Francesca Fanelli, Giuseppina Mulè, Antonio F Logrieco, Graziano Pesole, John F Leslie, David S Horner, Christopher Toomajian

Abstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Fusarium Genome Sequencing and Assembly.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Molecular Biodiversity inJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Article
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  9. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matteo ChiaraDepartment of Biosciences, University of Milan, Italy Institute of Biomembranes and Bioenergetics, National Research Council, Bari, Italy.
Francesca FanelliInstitute of Sciences of Food Production, National Research Council, Bari, Italy.
Giuseppina MulèInstitute of Sciences of Food Production, National Research Council, Bari, Italy.
Antonio F LogriecoInstitute of Sciences of Food Production, National Research Council, Bari, Italy.
Graziano PesoleInstitute of Biomembranes and Bioenergetics, National Research Council, Bari, Italy Department of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, Italy National Institute of Biostructures and Biosystems (INBB), Rome, Italy Center of Excellence in Comparative Genomics, University of Bari, Italy.
John F LeslieDepartment of Plant Pathology, Kansas State University, Manhattan.
David S HornerDepartment of Biosciences, University of Milan, Italy david.horner@unimi.it matteo.chiara@unimi.it toomajia@k-state.edu.
Christopher ToomajianDepartment of Plant Pathology, Kansas State University, Manhattan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Comparisons of draft genome sequences of three geographically distinct isolates of Fusarium fujikuroi with two recently published genome sequences from the same species suggest diverse profiles of secondary metabolite production within F. fujikuroi. Species- and lineage-specific genes, many of which appear to exhibit expression profiles that are consistent with roles in host-pathogen interactions and adaptation to environmental changes, are concentrated in subtelomeric regions. These genomic compartments also exhibit distinct gene densities and compositional characteristics with respect to other genomic partitions, and likely play a role in the generation of molecular diversity. Our data provide additional evidence that gene duplication, divergence, and differential loss play important roles in F. fujikuroi genome evolution and suggest that hundreds of lineage-specific genes might have been acquired through horizontal gene transfer.

Indexed as

Evolution, MolecularGenome, FungalAdaptation, PhysiologicalDNA, FungalFusariumGene DuplicationGenetics, PopulationGenetic VariationGene Transfer, HorizontalGenomicsHost-Pathogen InteractionsMultigene FamilyPhylogenySequence Analysis, DNADNA, Fungalcomparative genomicsmycotoxinsecondary metabolites

Identifiers

PMID26475319
PMCPMC5635591

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.