Evidence map›Paper›PMID 26474641›Full record

ArticlePlant physiology2015

Short Hypocotyl in White Light1 Interacts with Elongated Hypocotyl5 (HY5) and Constitutive Photomorphogenic1 (COP1) and Promotes COP1-Mediated Degradation of HY5 during Arabidopsis Seedling Development.

Anjil Kumar Srivastava, Dhirodatta Senapati, Archana Srivastava, Moumita Chakraborty, Sreeramaiah N Gangappa, Sudip Chattopadhyay

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. CUL3Science advances · 2026
    Article
  2. Ubiquitin-specific protease UBP14 stabilizes HY5 by deubiquitination to promote photomorphogenesis inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anjil Kumar SrivastavaDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India.
Dhirodatta SenapatiDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India.
Archana SrivastavaDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India.
Moumita ChakrabortyDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India.ORCID http://orcid.org/0000-0002-6093-0889
Sreeramaiah N GangappaDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India.ORCID http://orcid.org/0000-0003-1087-1523
Sudip ChattopadhyayDepartment of Biotechnology, National Institute of Technology, Durgapur 713209, India sudipchatto@gmail.com.ORCID http://orcid.org/0000-0001-5253-6673
National Institute of Technology Durgapur · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis (Arabidopsis thaliana) Short Hypocotyl in White Light1 (SHW1) encodes a Ser-Arg-Asp-rich protein that acts as a negative regulator of photomorphogenesis. SHW1 and Constitutive Photomorphogenic1 (COP1) genetically interact in an additive manner to suppress photomorphogenesis. Elongated Hypocotyl5 (HY5) is a photomorphogenesis promoting a basic leucine zipper transcription factor that is degraded by COP1 ubiquitin ligase in the darkness. Here, we report the functional interrelation of SHW1 with COP1 and HY5 in Arabidopsis seedling development. The in vitro and in vivo molecular interaction studies show that SHW1 physically interacts with both COP1 and HY5. The genetic studies reveal that SHW1 and HY5 work in an antagonistic manner to regulate photomorphogenic growth. Additional mutation of SHW1 in hy5 mutant background is able to suppress the gravitropic root growth defect of hy5 mutants. This study further reveals that the altered abscisic acid responsiveness of hy5 mutants is modulated by additional loss of SHW1 function. Furthermore, this study shows that SHW1 promotes COP1-mediated degradation of HY5 through enhanced ubiquitylation in the darkness. Collectively, this study highlights a mechanistic view on coordinated regulation of SHW1, COP1, and HY5 in Arabidopsis seedling development.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsBlotting, WesternGene Expression Regulation, PlantLightMutationNuclear ProteinsOrganogenesis, PlantPlant Growth RegulatorsProtein BindingProteolysisReverse Transcriptase Polymerase Chain ReactionSeedlingsTwo-Hybrid System TechniquesAbscisic AcidArabidopsis ProteinsAT2G32950 protein, ArabidopsisBasic-Leucine Zipper Transcription FactorsHY5 protein, ArabidopsisNuclear ProteinsPlant Growth RegulatorsSHW1 protein, ArabidopsisUbiquitin-Protein Ligases

Identifiers

PMID26474641
PMCPMC4677909
OpenAlexW2289304300

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.