Evidence map›Paper›PMID 26474238›Full record

ArticleAmerican journal of respiratory and critical care medicine2016

Genome-Wide Methylation Study Identifies an IL-13-induced Epigenetic Signature in Asthmatic Airways.

Jessie Nicodemus-Johnson, Katherine A Naughton, Jyotsna Sudi, Kyle Hogarth, Edward T Naurekas, Dan L Nicolae, Anne I Sperling, Julian Solway, Steven R White, Carole Ober

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed, 3 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 3 syntheses or guidelines pooled it, 116 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Epigenome-wide meta-analysis of DNA methylation and childhood asthma.The Journal of allergy and clinical immunology · 2019
    Pooled it
  4. Article
  5. Review
  6. Airway epithelial heterogeneity and mucus plugging in asthmatic bronchioles.American journal of respiratory and critical care medicine · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Epithelial sensing in allergic disease.Current opinion in immunology · 2024
    Review
  12. Epigenomic insights into common human disease pathology.Cellular and molecular life sciences : CMLS · 2024
    Review
  13. Epigenetic Approaches to Identifying Asthma Endotypes.Allergy, asthma & immunology research · 2024
    Review
  14. Human placental extract suppresses mast cell activation and induces mast cell apoptosis.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Epigenetic regulation of immune function in asthma.The Journal of allergy and clinical immunology · 2022
    Review
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jessie Nicodemus-Johnson1 Department of Human Genetics.
Katherine A Naughton1 Department of Human Genetics.
Jyotsna Sudi2 Section of Pulmonary and Critical Care Medicine.
Kyle Hogarth2 Section of Pulmonary and Critical Care Medicine.
Edward T Naurekas2 Section of Pulmonary and Critical Care Medicine.
Dan L Nicolae1 Department of Human Genetics.
Anne I Sperling2 Section of Pulmonary and Critical Care Medicine.
Julian Solway2 Section of Pulmonary and Critical Care Medicine.
Steven R White2 Section of Pulmonary and Critical Care Medicine.
Carole Ober1 Department of Human Genetics.
Pulmonary and Critical Care Associates · USUniversity of Chicago · US

Funding

Virus-Bacterial Interactions and Exacerba of AsthmaP01HL070831 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GERN, JAMES E. · 2002 to 2017
$31.3M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
RESEARCH TRAINING IN RESPIRATORY BIOLOGYT32HL007605 · NHLBI · UNIVERSITY OF CHICAGO · PI Yun Fang, Gokhan M. Mutlu · 1985 to 2026
$18.1M
Regulation and expression of HLA-G in asthmatic airwaysU19AI095230 · NIAID · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 2011 to 2016
$10.5M
Systems Genetics Approach to Gene Discovery in Chronic RhinosinusitisU19AI106683 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SCHLEIMER, ROBERT P · 2014 to 2017
$7.9M
NCATS NIH HHS UL1 TR000430NHLBI NIH HHS P01 HL070831NHLBI NIH HHS P01 HL70831NHLBI NIH HHS T32 HL007605NIAID NIH HHS U01 AI10668NIAID NIH HHS U19 AI095230NIAID NIH HHS U19 AI106683
6 · The paper itself

Abstract

rationaleEpigenetic changes to airway cells have been proposed as important modulators of the effects of environmental exposures on airway diseases, yet no study to date has shown epigenetic responses to exposures in the airway that correlate with disease state. The type 2 cytokine IL-13 is a key mediator of allergic airway diseases, such as asthma, and is up-regulated in response to many asthma-promoting exposures.

objectivesTo directly study the epigenetic response of airway epithelial cells (AECs) to IL-13 and test whether IL-13-induced epigenetic changes differ between individuals with and without asthma.

methodsGenome-wide DNA methylation and gene expression patterns were studied in 58 IL-13-treated and untreated primary AEC cultures and validated in freshly isolated cells of subjects with and without asthma using the Illumina Human Methylation 450K and HumanHT-12 BeadChips. IL-13-mediated comethylation modules were identified and correlated with clinical phenotypes using weighted gene coexpression network analysis. MEASUREMENTS AND MAIN

resultsIL-13 altered global DNA methylation patterns in cultured AECs and were significantly enriched near genes associated with asthma. Importantly, a significant proportion of this IL-13 epigenetic signature was validated in freshly isolated AECs from subjects with asthma and clustered into two distinct modules, with module 1 correlated with asthma severity and lung function and module 2 with eosinophilia.

conclusionsThese results suggest that a single exposure of IL-13 may selectively induce long-lasting DNA methylation changes in asthmatic airways that alter specific AEC pathways and contribute to asthma phenotypes.

Indexed as

AdultAsthmaCells, CulturedDNA MethylationEpigenesis, GeneticFemaleGenome-Wide Association StudyHumansInterleukin-13MaleInterleukin-13airway epithelial cellsasthmaepigenetic signatureIL-13

Identifiers

PMID26474238
PMCPMC4803084
OpenAlexW2115878572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.