Evidence map›Paper›PMID 26473045›Full record

ArticleRoyal Society open science2015

Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation.

Jessica A Goodheart, Adam L Bazinet, Allen G Collins, Michael P Cummings

Open access · goldAbstract read
In one paragraph

Article in Royal Society open science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Digestive Diverticula in the Carnivorous Nudibranch,Integrative organismal biology (Oxford, England) · 2021
    Article
  8. Command or Obey? Homologous Neurons Differ in Hierarchical Position for the Generation of Homologous Behaviors.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Evolution of central pattern generators and rhythmic behaviours.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jessica A GoodheartLaboratory of Molecular Evolution, Center for Bioinformatics and Computational Biology , University of Maryland, College Park , MD 20742, USA ; NMFS, National Systematics Laboratory , National Museum of Natural History, Smithsonian Institution , MRC-153, PO Box 37012, Washington, DC 20013, USA.
Adam L BazinetLaboratory of Molecular Evolution, Center for Bioinformatics and Computational Biology , University of Maryland, College Park , MD 20742, USA.
Allen G CollinsNMFS, National Systematics Laboratory , National Museum of Natural History, Smithsonian Institution , MRC-153, PO Box 37012, Washington, DC 20013, USA.
Michael P CummingsLaboratory of Molecular Evolution, Center for Bioinformatics and Computational Biology , University of Maryland, College Park , MD 20742, USA.
University of Maryland, College Park · USSmithsonian Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cladobranchia (Gastropoda: Nudibranchia) is a diverse (approx. 1000 species) but understudied group of sea slug molluscs. In order to fully comprehend the diversity of nudibranchs and the evolution of character traits within Cladobranchia, a solid understanding of evolutionary relationships is necessary. To date, only two direct attempts have been made to understand the evolutionary relationships within Cladobranchia, neither of which resulted in well-supported phylogenetic hypotheses. In addition to these studies, several others have addressed some of the relationships within this clade while investigating the evolutionary history of more inclusive groups (Nudibranchia and Euthyneura). However, all of the resulting phylogenetic hypotheses contain conflicting topologies within Cladobranchia. In this study, we address some of these long-standing issues regarding the evolutionary history of Cladobranchia using RNA-Seq data (transcriptomes). We sequenced 16 transcriptomes and combined these with four transcriptomes from the NCBI Sequence Read Archive. Transcript assembly using Trinity and orthology determination using HaMStR yielded 839 orthologous groups for analysis. These data provide a well-supported and almost fully resolved phylogenetic hypothesis for Cladobranchia. Our results support the monophyly of Cladobranchia and the sub-clade Aeolidida, but reject the monophyly of Dendronotida.

Indexed as

MolluscanudibranchsphylogenomicsphylotranscriptomicsRNA-Seqsea slugs

Identifiers

PMID26473045
PMCPMC4593679
OpenAlexW2177656671

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.