Evidence map›Paper›PMID 26472760›Full record

ArticleScience (New York, N.Y.)2015

Gene essentiality and synthetic lethality in haploid human cells.

Vincent A Blomen, Peter Májek, Lucas T Jae, Johannes W Bigenzahn, Joppe Nieuwenhuis, Jacqueline Staring, Roberto Sacco, Ferdy R van Diemen, Nadine Olk, Alexey Stukalov and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Science (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 559 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
559citing papers in PubMed, 1 pooled it
43.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

559 citing papers in PubMed, 1 synthesis or guideline pooled it, 939 citations in OpenAlex.

  1. Pooled it
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  11. The power of many: when genetics met yeasts and high-throughput.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
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  19. Saturation Genome Editing TargetingCurrent issues in molecular biology · 2026
    Article
  20. Article

499 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Vincent A BlomenNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Peter MájekCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Lucas T JaeNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Johannes W BigenzahnCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Joppe NieuwenhuisNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Jacqueline StaringNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Roberto SaccoCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Ferdy R van DiemenNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Nadine OlkCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Alexey StukalovCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Caleb MarceauDepartment of Microbiology and Immunology, Stanford University School of Medicine, 299 Campus Drive, Stanford, CA 94305, USA.
Hans JanssenNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands.
Jan E CaretteDepartment of Microbiology and Immunology, Stanford University School of Medicine, 299 Campus Drive, Stanford, CA 94305, USA.
Keiryn L BennettCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria.
Jacques ColingeCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria. University of Montpellier, Institut de Recherche en Cancérologie de Montpellier Inserm U1194, Institut régional du Cancer Montpellier, 34000 Montpellier, France. jacques.colinge@inserm.fr gsuperti@cemm.at t.brummelkamp@nki.nl.
Giulio Superti-FurgaCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria. jacques.colinge@inserm.fr gsuperti@cemm.at t.brummelkamp@nki.nl.
Thijn R BrummelkampNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria. Cancer Genomics Center (CGC.nl), Plesmanlaan 121, 1066CX, Amsterdam, Netherlands. jacques.colinge@inserm.fr gsuperti@cemm.at t.brummelkamp@nki.nl.
Austrian Academy of Sciences · ATThe Netherlands Cancer Institute · NLCeMM Research Center for Molecular Medicine · ATStanford University · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Austrian Science Fund FWF F 4711
6 · The paper itself

Abstract

Although the genes essential for life have been identified in less complex model organisms, their elucidation in human cells has been hindered by technical barriers. We used extensive mutagenesis in haploid human cells to identify approximately 2000 genes required for optimal fitness under culture conditions. To study the principles of genetic interactions in human cells, we created a synthetic lethality network focused on the secretory pathway based exclusively on mutations. This revealed a genetic cross-talk governing Golgi homeostasis, an additional subunit of the human oligosaccharyltransferase complex, and a phosphatidylinositol 4-kinase β adaptor hijacked by viruses. The synthetic lethality map parallels observations made in yeast and projects a route forward to reveal genetic networks in diverse aspects of human cell biology.

Indexed as

Gene Regulatory NetworksGenes, EssentialGenes, LethalHaploidyGenetic FitnessGolgi ApparatusHexosyltransferasesHumansMembrane ProteinsMutagenesis, InsertionalMutationSaccharomyces cerevisiaedolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferasesMembrane Proteins

Identifiers

PMID26472760
OpenAlexW2174686320

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.