Evidence map›Paper›PMID 26471806›Full record

ArticleBMC research notes2015

Use of aminoglycoside 3' adenyltransferase as a selection marker for Chlamydia trachomatis intron-mutagenesis and in vivo intron stability.

Nicole M Lowden, Laxmi Yeruva, Cayla M Johnson, Anne K Bowlin, Derek J Fisher

Abstract read
In one paragraph

Article in BMC research notes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Journal of bacteriology · 2025
    Review
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  6. Requirement of GrgA forbioRxiv : the preprint server for biology · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. TheInfection and immunity · 2022
    Article
  12. Article
  13. Review
  14. Host and Bacterial Glycolysis duringInfection and immunity · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Forward and Reverse Genetic Analysis of Chlamydia.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  20. Chlamydial Infection From Outside to Inside.Frontiers in microbiology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nicole M LowdenDepartment of Microbiology, Southern Illinois University, 1125 Lincoln Drive, Carbondale, IL, 62901, USA. Lowden08@siu.edu.
Laxmi YeruvaDepartments of Pediatrics, Arkansas Children's Hospital Research Institute, Arkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, 72202, USA. VLYeruva@uams.edu.
Cayla M JohnsonDepartment of Microbiology, Southern Illinois University, 1125 Lincoln Drive, Carbondale, IL, 62901, USA. cjohnson@siu.edu.
Anne K BowlinDepartments of Pediatrics, Arkansas Children's Hospital Research Institute, Arkansas Children's Nutrition Center, University of Arkansas for Medical Sciences, Little Rock, AR, 72202, USA. BowlinAnneK@uams.edu.
Derek J FisherDepartment of Microbiology, Southern Illinois University, 1125 Lincoln Drive, Carbondale, IL, 62901, USA. dfisher@siu.edu.

Funding

Unraveling the role of protein phosphorylation in the regulation of development in Chlamydia trachomatisR15AI109566 · NIAID · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI FISHER, DEREK JAMES · 2014 to 2020
$887k
Development of gene inactivation methods for Chlamydia spp.R21AI115238 · NIAID · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI FISHER, DEREK JAMES · 2015 to 2016
$406k
NIAID NIH HHS 1R15AI109566-01A1NIAID NIH HHS 1R21AI115238-01NIAID NIH HHS R15 AI109566NIAID NIH HHS R21 AI115238
6 · The paper itself

Abstract

backgroundC hlamydia spp. are obligate, intracellular bacteria that infect humans and animals. Research on these important pathogens has been hindered due to a paucity of genetic tools. We recently adapted a group II intron (GII) mutagenesis platform for creation of ampicillin-selectable gene insertions in C. trachomatis L2. The aims of this study were: (1) to assess the stability of the intron-insertion in an in vivo infection model to gauge the efficacy of this genetic tool for long term animal studies and (2) to expand upon the utility of the method by validating a second selection marker (aadA, conferring spectinomycin resistance) for mutant construction.

resultsIntron stability was assessed using a mouse vaginal tract infection model with a C. trachomatis L2 434/Bu incA::GII(bla) mutant. Infections were performed in the absence of selection and isolates shed into the vaginal tract were isolated and expanded in cell culture (also without selection). PCR and inclusion phenotype analysis indicated that the intron was stable for at least 27 days post-infection (at which point bacteria were no longer recovered from the mouse). The aminoglycoside 3' adenyltransferase (aadA) gene was used to create a spectinomycin-selectable GII intron, facilitating the construction of an incA::GII[aadA] C. trachomatis L2 insertion mutant. Both the GII(aadA) intron and our previously reported GII(bla) intron were then used to create an incA::GII(aadA), rsbV1::GII(bla) double mutant. Mutants were confirmed via PCR, sequencing, inclusion morphology (incA only), and western blot.

conclusionsThe stability of the intron-insertion during in vivo growth indicates that the GII-insertion mutants can be used to study pathogenesis using the well-established mouse infection model. In addition, the validation of an additional marker for mutagenesis in Chlamydia allows for gene complementation approaches and construction of targeted, double mutants in Chlamydia. The aadA marker also could be useful for other genetic methods. Collectively, our results expand upon the rapidly growing chlamydial genetic toolkit and will aid in the implementation of studies dissecting the contribution of individual genes to infection.

Indexed as

Genomic InstabilityIntronsAmpicillinAnimalsAnti-Bacterial AgentsBacterial ProteinsChlamydia InfectionsChlamydia trachomatisDisease Models, AnimalDrug Resistance, BacterialEscherichia coliFemaleGenetic MarkersHumansMiceMice, Inbred BALB CAmpicillinAnti-Bacterial AgentsBacterial ProteinsGenetic MarkersNucleotidyltransferasesSpectinomycinstreptomycin 3''-adenylyltransferase

Identifiers

PMID26471806
PMCPMC4606545

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.