Evidence map›Paper›PMID 26470640›Full record

ArticleMitochondrial DNA. Part A, DNA mapping, sequencing, and analysis2016

The efficiency of the translesion synthesis across abasic sites by mitochondrial DNA polymerase is low in mitochondria of 3T3 cells.

Natalya Kozhukhar, Domenico Spadafora, Rafik Fayzulin, Inna N Shokolenko, Mikhail Alexeyev

Abstract read
In one paragraph

Article in Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Transient State Kinetics ofBiochemistry · 2022
    Article
  6. Review
  7. Mitochondrial transcription factor A promotes DNA strand cleavage at abasic sites.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Natalya Kozhukhara Department of Physiology and Cell Biology , University of South Alabama , Mobile , AL , USA.
Domenico Spadaforab Department of Pharmacology , University of South Alabama , Mobile , AL , USA and.
Rafik Fayzulina Department of Physiology and Cell Biology , University of South Alabama , Mobile , AL , USA.
Inna N Shokolenkoc Department of Biomedical Sciences , University of South Alabama, Patt Capps Covey College of Allied Health Professions , Mobile , AL , USA.
Mikhail Alexeyeva Department of Physiology and Cell Biology , University of South Alabama , Mobile , AL , USA.
University of South Alabama · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI ALVAREZ, DIEGO F. · 2001 to 2022
$34.6M
Mouse models for mitochondrial disorders caused by mutations in mtDNAR01OD010944 · OD · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F., WALLACE, DOUGLAS C · 2012 to 2020
$2.6M
NHLBI NIH HHS P01 HL066299NIH HHS R01 OD010944
6 · The paper itself

Abstract

Translesion synthesis by specialized DNA polymerases is an important strategy for mitigating DNA damage that cannot be otherwise repaired either due to the chemical nature of the lesion. Apurinic/Apyrimidinic (abasic, AP) sites represent a block to both transcription and replication, and are normally repaired by the base excision repair (BER) pathway. However, when the number of abasic sites exceeds BER capacity, mitochondrial DNA is targeted for degradation. Here, we used two uracil-N-glycosylase (UNG1) mutants, Y147A or N204D, to generate AP sites directly in the mtDNA of NIH3T3 cells in vivo at sites normally occupied by T or C residues, respectively, and to study repair of these lesions in their native context. We conclude that mitochondrial DNA polymerase γ (Pol γ) is capable of translesion synthesis across AP sites in mitochondria of the NIH3T3 cells, and obeys the A-rule. However, in our system, base excision repair (BER) and mtDNA degradation occur more frequently than translesion bypass of AP sites.

Indexed as

AnimalsBase CompositionBase SequenceBiological EvolutionDNA DamageDNA-Directed DNA PolymeraseDNA GlycosylasesDNA, MitochondrialDNA Polymerase gammaDNA RepairGene OrderGenes, MitochondrialGenomeGenome, MitochondrialMiceMitochondriaDNA-Directed DNA PolymeraseDNA GlycosylasesDNA, MitochondrialDNA Polymerase gammaAbasic sitesBase Excision RepairDNA polymerase gammamitochondrial DNA damagetranslesional synthesis

Identifiers

PMID26470640
PMCPMC4834068
OpenAlexW2184231625

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.