Evidence map›Paper›PMID 26469538›Full record

ArticleScientific reports2015

Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection.

Abhijit Maji, Richa Misra, Anupam Kumar Mondal, Dhirendra Kumar, Divya Bajaj, Anshika Singhal, Gunjan Arora, Asani Bhaduri, Andaleeb Sajid, Sugandha Bhatia and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 3 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 3 syntheses or guidelines pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
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  6. Host- and pathogen-related determinants of pulmonaryEuropean respiratory review : an official journal of the European Respiratory Society · 2026
    Review
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  13. More thanThorax · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Abhijit MajiCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Richa MisraCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Anupam Kumar MondalCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Dhirendra KumarCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Divya BajajDepartment of Zoology, University of Delhi, Delhi, India.
Anshika SinghalCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Gunjan AroraCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Asani BhaduriCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Andaleeb SajidCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Sugandha BhatiaCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Sompal SinghHindu Rao Hospital, Malka Ganj, Delhi, India.
Harshvardhan SinghHindu Rao Hospital, Malka Ganj, Delhi, India.
Vivek RaoCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Debasis DashCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
E Baby ShaliniChristian Medical College, Vellore, Tamil Nadu, India.
Joy Sarojini MichaelChristian Medical College, Vellore, Tamil Nadu, India.
Anil ChaudharyRajan Babu Institute of Pulmonary Medicine and Tuberculosis, Delhi, India.
Rajesh S GokhaleCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Yogendra SinghCSIR-Institute of Genomics &Integrative Biology, Mall Road, Delhi, India.
Institute of Genomics and Integrative Biology · INChristian Medical College & Hospital · INHindu Rao Hospital · INUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extrapulmonary manifestations constitute 15 to 20% of tuberculosis cases, with lymph node tuberculosis (LNTB) as the most common form of infection. However, diagnosis and treatment advances are hindered by lack of understanding of LNTB biology. To identify host response, Mycobacterium tuberculosis infected lymph nodes from LNTB patients were studied by means of transcriptomics and quantitative proteomics analyses. The selected targets obtained by comparative analyses were validated by quantitative PCR and immunohistochemistry. This approach provided expression data for 8,728 transcripts and 102 proteins, differentially regulated in the infected human lymph node. Enhanced inflammation with upregulation of T-helper1-related genes, combined with marked dysregulation of matrix metalloproteinases, indicates tissue damage due to high immunoactivity at infected niche. This expression signature was accompanied by significant upregulation of an immunoregulatory gene, leukotriene A4 hydrolase, at both transcript and protein levels. Comparative transcriptional analyses revealed LNTB-specific perturbations. In contrast to pulmonary TB-associated increase in lipid metabolism, genes involved in fatty-acid metabolism were found to be downregulated in LNTB suggesting differential lipid metabolic signature. This study investigates the tissue molecular signature of LNTB patients for the first time and presents findings that indicate the possible mechanism of disease pathology through dysregulation of inflammatory and tissue-repair processes.

Indexed as

Gene Expression ProfilingAdolescentAdultChildCytokinesEpoxide HydrolasesFatty AcidsFemaleHumansImmunohistochemistryLipid MetabolismLymph NodesMaleMatrix MetalloproteinasesProteomicsReal-Time Polymerase Chain ReactionCytokinesEpoxide HydrolasesFatty Acidsleukotriene A4 hydrolaseMatrix Metalloproteinases

Identifiers

PMID26469538
PMCPMC4606593
OpenAlexW2420067746

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.