Evidence map›Paper›PMID 26468873›Full record

ArticlePLoS pathogens2015

Distinct Viral and Mutational Spectrum of Endemic Burkitt Lymphoma.

Francesco Abate, Maria Raffaella Ambrosio, Lucia Mundo, Maria Antonella Laginestra, Fabio Fuligni, Maura Rossi, Sakellarios Zairis, Sara Gazaneo, Giulia De Falco, Stefano Lazzi and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 2 pooled it
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 2 syntheses or guidelines pooled it, 174 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Subtyping Burkitt Lymphoma by DNA Methylation.Genes, chromosomes & cancer · 2025
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. HemaSphere · 2023
    Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 5 countries.

Francesco AbateDepartment of Systems Biology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America; Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
Maria Raffaella AmbrosioDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Lucia MundoDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Maria Antonella LaginestraDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Fabio FuligniDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Maura RossiDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Sakellarios ZairisDepartment of Systems Biology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
Sara GazaneoDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Giulia De FalcoDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
Stefano LazziDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Cristiana BellanDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Bruno Jim RoccaDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Teresa AmatoDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy.
Elena MarascoDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Maryam EtebariDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Martin OgwangLacor Hospital, Gulu, Uganda.
Valeria CalbiLacor Hospital, Gulu, Uganda.
Isaac NdedeMoi University, Eldoret, Kenya.
Kirtika PatelMoi University, Eldoret, Kenya.
David ChumbaMoi University, Eldoret, Kenya.
Pier Paolo PiccalugaDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Stefano PileriDepartment of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy; Unit of Haematopathology, European Institute of Oncology, Milan and Bologna University School of Medicine, Bologna, Italy.
Lorenzo LeonciniDepartment of Medical Biotechnologies, Section of Pathology, University of Siena, Siena, Italy; Department of Experimental, Diagnostic, and Specialty Medicine (DIMES), S. Orsola-Malpighi Hospital, Bologna University School of Medicine, Bologna, Italy.
Raul RabadanDepartment of Systems Biology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America; Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
University of Siena · ITPoliclinico S.Orsola-Malpighi · ITColumbia University · USMoi University · KESt. Mary's Hospital Lacor · UGEuropean Institute of Oncology · IT

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
NCI NIH HHS 1 U54 CA121852-05NCI NIH HHS U54 CA121852
6 · The paper itself

Abstract

Endemic Burkitt lymphoma (eBL) is primarily found in children in equatorial regions and represents the first historical example of a virus-associated human malignancy. Although Epstein-Barr virus (EBV) infection and MYC translocations are hallmarks of the disease, it is unclear whether other factors may contribute to its development. We performed RNA-Seq on 20 eBL cases from Uganda and showed that the mutational and viral landscape of eBL is more complex than previously reported. First, we found the presence of other herpesviridae family members in 8 cases (40%), in particular human herpesvirus 5 and human herpesvirus 8 and confirmed their presence by immunohistochemistry in the adjacent non-neoplastic tissue. Second, we identified a distinct latency program in EBV involving lytic genes in association with TCF3 activity. Third, by comparing the eBL mutational landscape with published data on sporadic Burkitt lymphoma (sBL), we detected lower frequencies of mutations in MYC, ID3, TCF3 and TP53, and a higher frequency of mutation in ARID1A in eBL samples. Recurrent mutations in two genes not previously associated with eBL were identified in 20% of tumors: RHOA and cyclin F (CCNF). We also observed that polyviral samples showed lower numbers of somatic mutations in common altered genes in comparison to sBL specimens, suggesting dual mechanisms of transformation, mutation versus virus driven in sBL and eBL respectively.

Indexed as

Burkitt LymphomaCytomegalovirusDNA Mutational AnalysisEndemic DiseasesEpstein-Barr Virus InfectionsHerpesvirus 4, HumanHerpesvirus 8, HumanHumansImmunohistochemistryPolymerase Chain ReactionRNA, ViralUgandaRNA, Viral

Identifiers

PMID26468873
PMCPMC4607508
OpenAlexW2139963681

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.