Evidence map›Paper›PMID 26468041›Full record

ArticleFEMS microbiology letters2015

Random transposon mutagenesis of the Saccharopolyspora erythraea genome reveals additional genes influencing erythromycin biosynthesis.

Andrij Fedashchin, William H Cernota, Melissa C Gonzalez, Benjamin I Leach, Noelle Kwan, Roy K Wesley, J Mark Weber

Abstract read
In one paragraph

Article in FEMS microbiology letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrij FedashchinFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
William H CernotaFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
Melissa C GonzalezFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
Benjamin I LeachFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
Noelle KwanFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
Roy K WesleyFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA.
J Mark WeberFermalogic, Research and Development, 4222 N. Ravenswood Avenue, Chicago, IL 60613, USA mark.weber@fermalogic.com.

Funding

Industrial Metabolic EngineeringR43GM079893 · NIGMS · FERMALOGIC, INC. · PI WEBER, J. MARK · 2007 to 2007
$211k
NIGMS NIH HHS R43 GM079893NIGMS NIH HHS R43-GM079893
6 · The paper itself

Abstract

A single cycle of strain improvement was performed in Saccharopolyspora erythraea mutB and 15 genotypes influencing erythromycin production were found. Genotypes generated by transposon mutagenesis appeared in the screen at a frequency of ~3%. Mutations affecting central metabolism and regulatory genes were found, as well as hydrolases, peptidases, glycosyl transferases and unknown genes. Only one mutant retained high erythromycin production when scaled-up from micro-agar plug fermentations to shake flasks. This mutant had a knockout of the cwh1 gene (SACE_1598), encoding a cell-wall-associated hydrolase. The cwh1 knockout produced visible growth and morphological defects on solid medium. This study demonstrated that random transposon mutagenesis uncovers strain improvement-related genes potentially useful for strain engineering.

Indexed as

DNA Transposable ElementsMutagenesis, InsertionalAnti-Bacterial AgentsBiosynthetic PathwaysErythromycinGenes, BacterialGenome, BacterialMetabolic EngineeringSaccharopolysporaAnti-Bacterial AgentsDNA Transposable ElementsErythromycinActinomycesdirected evolutionerythromycinstrain improvementtransposon

Identifiers

PMID26468041
PMCPMC4809991

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.