Evidence map›Paper›PMID 26467478›Full record

ArticleNucleic acids research2016

FlyBase: establishing a Gene Group resource for Drosophila melanogaster.

Helen Attrill, Kathleen Falls, Joshua L Goodman, Gillian H Millburn, Giulia Antonazzo, Alix J Rey, Steven J Marygold, FlyBase Consortium

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 208 papers.

0numbers the graph read from it
0cells of the map it votes in
208citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

208 citing papers in PubMed.

  1. Article
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  3. Article
  4. Article
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  7. Article
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  9. Long non-coding RNAs involved inNAR genomics and bioinformatics · 2024
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  10. Misregulation of bromotyrosine compromises fertility in maleProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. The alpha-ketoacid dehydrogenase complexes ofmicroPublication biology · 2024
    Article
  14. Article
  15. A new metabolic model ofLife science alliance · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. PANGEA: A New Gene Set Enrichment Tool forbioRxiv : the preprint server for biology · 2023
    Article
  20. Article

148 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Helen AttrillDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.
Kathleen FallsThe Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.
Joshua L GoodmanDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Gillian H MillburnDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.
Giulia AntonazzoDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.
Alix J ReyDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.
Steven J MarygoldDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK sjm41@cam.ac.uk.
FlyBase Consortium

Funding

FLYBASE: A DROSOPHILA RELATIONAL DATABASEP41HG000739 · NHGRI · HARVARD UNIVERSITY · PI GELBART, WILLIAM MARTIN · 1992 to 2014
$56.6M
Resource Project CoreU41HG000739 · NHGRI · HARVARD UNIVERSITY · PI PERRIMON, NORBERT · 2014 to 2022
$32.3M
Medical Research Council G1000968NHGRI NIH HHS P41 HG000739NHGRI NIH HHS U41 HG000739
6 · The paper itself

Abstract

Many publications describe sets of genes or gene products that share a common biology. For example, genome-wide studies and phylogenetic analyses identify genes related in sequence; high-throughput genetic and molecular screens reveal functionally related gene products; and advanced proteomic methods can determine the subunit composition of multi-protein complexes. It is useful for such gene collections to be presented as discrete lists within the appropriate Model Organism Database (MOD) so that researchers can readily access these data alongside other relevant information. To this end, FlyBase (flybase.org), the MOD for Drosophila melanogaster, has established a 'Gene Group' resource: high-quality sets of genes derived from the published literature and organized into individual report pages. To facilitate further analyses, Gene Group Reports also include convenient download and analysis options, together with links to equivalent gene groups at other databases. This new resource will enable researchers with diverse backgrounds and interests to easily view and analyse acknowledged D. melanogaster gene sets and compare them with those of other species.

Indexed as

Databases, GeneticGenes, InsectAnimalsDrosophila melanogasterDrosophila ProteinsDrosophila Proteins

Identifiers

PMID26467478
PMCPMC4702782

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.