ArticleBMC genomics2015
Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani.
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes.Genome biology and evolution · 2024Article
- Clonality and Diversity in the Soft RotInternational journal of molecular sciences · 2023Article
- Phyloproteomic study by MALDI-TOF MS in view of intraspecies variation in a significant homogenous phytopathogen Dickeya solani.Scientific reports · 2023Article
- A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria.PLoS genetics · 2023Article
- Insight into biodiversity of the recently rearranged genusFrontiers in plant science · 2023Article
- Dissimilar gene repertoires ofFrontiers in plant science · 2023Article
- Article
- Patterns of Genomic Variations in the Plant PathogenMicroorganisms · 2022Article
- BuscoPhylo: a webserver for Busco-based phylogenomic analysis for non-specialists.Scientific reports · 2022Article
- Article
- Pathogenicity and Relative Abundance ofMicroorganisms · 2021Article
- Early Emergence ofMicroorganisms · 2021Article
- European Population ofMicroorganisms · 2021Article
- Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani.BMC genomics · 2020Article
- Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco.Microorganisms · 2020Article
- Genome-Wide Identification ofFrontiers in plant science · 2020Article
- Acetylome analysis of lysine acetylation in the plant pathogenic bacterium Brenneria nigrifluens.MicrobiologyOpen · 2020Article
- Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates.BMC genomics · 2019Article
- Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels.Molecular plant pathology · 2018Article
- Complete Chromosome and Plasmid Sequences of Two Plant Pathogens, Dickeya solani Strains D s0432-1 and PPO 9019.Genome announcements · 2018Article
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9 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundDickeya solani is an emerging pathogen that causes soft rot and blackleg diseases in several crops including Solanum tuberosum, but little is known about its genomic diversity and evolution.
resultsWe combined Illumina and PacBio technologies to complete the genome sequence of D. solani strain 3337 that was used as a reference to compare with 19 other genomes (including that of the type strain IPO2222(T)) which were generated by Illumina technology. This population genomic analysis highlighted an unexpected variability among D. solani isolates since it led to the characterization of two distinct sub-groups within the D. solani species. This approach also revealed different types of variations such as scattered SNP/InDel variations as well as replacing and additive horizontal gene transfers (HGT). Infra-species (between the two D. solani sub-groups) and inter-species (between D. solani and D. dianthicola) replacing HGTs were observed. Finally, this work pointed that genetic and functional variation in the motility trait could contribute to aggressiveness variability in D. solani.
conclusionsThis work revealed that D. solani genomic variability may be caused by SNPs/InDels as well as replacing and additive HGT events, including plasmid acquisition; hence the D. solani genomes are more dynamic than that were previously proposed. This work alerts on precautions in molecular diagnosis of this emerging pathogen.
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